zap
background [255,255,255]
load pdb 1qu2.pdb
set ambient 60
set specular off

reset
slab off
rotate z 106
rotate y -17
rotate x -89
translate x -4

set bonds off
set axes off
set boundingbox off
set unitcell off
set bondmode and
dots off

echo
echo
echo Ile-tRNA:synthetase complex with mupirocin
echo Science 1999, 285, 1074
echo tRNA uncharged with Ile
echo last 2 nucleotides (Cyt75 and Ade76) have little density
echo tRNA *T blue
echo  3' end   Cyt75  75:T  red
echo IleRS *a grey
echo  conserved sequence KMSKS 595-599 yellow  for ATP binding
echo HMGH 64-67:a magenta
echo editing domain 180-410:a gold  
echo mupirocin  MRC 
echo
echo
 restrict *a, *T, MRC
 background white
 select *a
color grey
spacefill
select 595-599:a
color yellow
select 64-67:a
color magenta

select 180-410:a
color gold
select *T
color blue
wireframe 100
select 75:T
color red
select MRC
 color cpk
 wireframe 150

echo  residues in synthetic site in green
echo residues in  editing sites in red


select 392:a, 394:a, 240:a, 233:a
color red

select 56-57:a, 94:a, 528:a, 558:a, 562:a
color green
echo