A = "gtggcaacgtgc" B = "gtagcagcgcgc" C = "gcggcacagggt" D = "gtgacaacgtgc" def method1(c1, c2): discreps = 0 for i in range(len(c1)): if c1[i] != c2[i]: discreps = discreps + 1 return discreps def method2(c1, c2): discreps_a = abs(c1.count('a') - c2.count('a')) discreps_c = abs(c1.count('c') - c2.count('c')) discreps_g = abs(c1.count('g') - c2.count('g')) discreps_t = abs(c1.count('t') - c2.count('t')) return discreps_a + discreps_c + discreps_g + discreps_t def compare(c1, c2, name1, name2): print name1, "and", name2, ":" print "Method 1 says there are", method1(c1, c2), "differences." print "Method 2 says there are", method2(c1, c2), "differences." print compare(A, B, "A", "B") compare(A, C, "A", "C") compare(A, D, "A", "D") compare(B, C, "B", "C") compare(B, D, "B", "D") compare(C, D, "C", "D")