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Lecture notes files.
| SES # |
TOPICS |
REFERENCES |
| 1 |
Biological Engineering and Programming DNA (PDF) |
|
| 2 |
Abstraction: From DNA to Parts |
|
| 3 |
Abstraction: From Parts to Devices |
|
| 4 |
Device Modeling and Simplification |
|
| 5 |
Guest Lecture: Tom Knight |
|
| 6 |
Guest Lecture: Gerry Sussman |
|
| 7 |
Device Analysis |
|
| 8 |
Device Composition |
|
| 9 |
Decomposition of Complex Problems |
|
| 10 |
Devices, Revisited |
|
| 11 |
Genetic Devices and Device Modeling (PDF) |
Comic (PDF - 1.5 MB)#
First Order Decay (PDF)
Second Order Binding (PDF) |
| 12 |
Discussion and Review |
|
|
Exam 1 |
|
| 13 |
Sequence Optimization |
|
| 14 |
DNA Detection and Identification |
|
| 15 |
Space and Time Systems |
|
| 16 |
Programming Space and Time Systems |
|
| 17 |
Programming Space and Time Systems (cont.) |
|
| 18 |
Growing Point Language |
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| 19 |
"Crop Circle" Language |
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| 20 |
Semester Review |
|
|
Exam 2 |
|
| 21 |
Course Evaluation and Wrap-Up |
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