Special software is required to use some of the files in this section: .dcm, .mnc, and .zip.
Lab files.
| LABS |
TOPICS |
LAB INSTRUCTORS |
SUPPORTING FILES |
| Lab 1 |
Introduction to fMRI data and analysis (PDF) |
Bolar |
Solutions (PDF)
NeuroLens software
NeuroLens tutorial:
"Loading DICOM Files and doing an fMRI Analysis" with modifications by Div Bolar (PDF) (Courtesy of Rick Hoge. Used with permission.)
Data for tutorial (ZIP - 23.4 MB) (The ZIP file contains: 218 .dcm, 2 .mnc files, and Stimulus Timing.rtf)
|
| Lab 2 |
fMRI acquisition (PDF - 1.4 MB) |
Whitfield-Gabrieli, Triantafyllou |
Lab outline (PDF)
fMRI scan checklist (PDF)
Detailed explanation of fMRI task paradigms (PDF)
Software and data (ZIP - 164 MB)
|
| Lab 3 |
The life cycle of medical imaging data (PDF) |
Pujol |
Presentation (PDF - 4.0 MB)
Download 3DSlicer code
Lab data (ZIP - 92 MB)
3DSlicer tutorial:
Getting Started with Slicer2.6
Pre-computed dataset for tutorial (ZIP – 17.8 MB)
|
| Lab 4 |
MRI physics
Part I (PDF)
Part II (PDF)
|
Trinatafyllou
|
Lab data (PDF)
Notes, part I (PDF)
Notes, part II (PDF)
|
| Lab 5 |
Diffusion weighted imaging workshop (PDF) |
Pujol |
Presentation (PDF) |
| Lab 6 |
Statistical analysis of fMRI data
Part I (PDF)
Part II (PDF)
Part III (PDF)
Part IV (PDF)
|
Yendiki
|
Data for Parts I-III: subject 7 (ZIP – 56.5 MB) (The ZIP file contains: 368 .dcm files.)
Data for Part IV: subjects HST1 and HST2 (ZIP – 97.1 MB) (The ZIP file contains: 736 .dcm files.)
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