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7.012 Introduction to Biology, Fall 2004

These files are also available on iTunes® and YouTube™.

7.012 Video Files
LEC AP TOPICS COVERED DOWNLOADABLE MEDIA
1
  • History of Earth
  • Organelles of the Eukaryotic Cell
  • Organelles of Various Cell Types
  • Prokaryotic and Eukaryotic Cells
  • Transcript (PDF)
2
  • Atoms, Bonds, and Molecules in Biology
  • Carbohydrates - Overview
  • Hydrophobic, Hydrophilic, and Amphipathic Molecules
  • Interactions Between Biological Molecules
  • Phospholipid Bilayer
  • Polymerization of Macromolecules
  • Transcript (PDF)
3
  • Polymerization of Macromolecules
  • Amino Acids and Proteins/Polypeptides
  • Amino Acid Side Chains and Disulfide Bonds
  • Three-Dimensional Structure of Proteins I
  • Enzymatic and Structural Functions of Proteins
  • Three-Dimensional Structure of Proteins II
  • Biological Conditions and Enzyme Activity
  • Nucleic Acids -- Overview
  • Transcript (PDF)
4
  • Double Helix and Base Complementarity
  • Nucleic Acids - Bases and Nomenclature
  • Nucleic Acids - Polymerization
  • Nucleic Acids - Structure
  • Post-translational Modification
  • RNA Double Helix
  • Transmembrane Proteins
  • Transcript (PDF)
5
  • Biochemical Reactions, Energy, and Enzymes
  • Energy Production of Anaerobic and Aerobic Respiration
  • Glycolysis and Krebs Cycle
  • Mitochondria Function and Production of ATP
  • Transcript (PDF)
6
  • Chromosomal Theory of Inheritance I
  • Definitions in Genetics
  • Mendel
  • Mendel's Experiments and Law of Segregation
  • Test Crosses as Proofs for Mendel's Model
  • Transcript (PDF)
7
  • Chromosomal Theory of Inheritance II
  • Genetic Distance and Recombination
  • Genetic Linkage
  • Genetic Maps
  • Mendel's Law of Independent Assortment
  • Sex Linkage
  • Transcript (PDF)
9
  • Consanguinity and Recessive Inheritance
  • Human Genetics and Pedigrees
  • Other Influences of Inheritance
  • Properties of X-linked and Autosomal Dominant Inheritance
  • Transcript (PDF)
10
  • Genetic Material - Avery's Experiment
  • Structure of DNA
  • The Double Helix - Watson and Crick
  • Transforming Principle - Griffith's Experiment
  • Transcript (PDF)
11
  • DNA Replication - Components and Direction
  • DNA Replication - Fidelity
  • DNA Replication - Leading and Lagging Strands and Enzymes
  • Transcription
  • Translation I
  • Transcript (PDF)
12
  • Alternative Splicing
  • Post-Transcriptional Modifications
  • Replication and Transcription in Viruses
  • Translation II
  • Variation on DNA Replication
  • Transcript (PDF)
13
  • Gene Regulation in Bacteria
  • Gene Regulation - Levels
  • Structure of the Lac Operon and Transcriptional Repressor
  • Transcriptional Activator
  • Transcript (PDF)
15
  • Cloning - DNA Ligases
  • Cloning Genes - Overview
  • Cloning - Restriction Enzymes
  • Cloning - Transformation and Selection
  • Cloning - Vectors/Plasmids
  • Transcript (PDF)
16
  • Cloning by Complementation
  • Cloning by Position I
  • Cloning by Sequence
  • Transcript (PDF)
17
  • Cloning by Position II
  • Expression Library
  • Restriction Mapping and Gel Electrophoresis
  • Transcript (PDF)
18
  • Polymerase Chain Reaction (PCR)
  • PCR - Application
  • Sequencing Genome
  • Transcript (PDF)
19
  • Cell Cycle - Overview
  • Cell Cycle - Regulation I
  • Cell Growth and Division
  • Transcript (PDF)
20
  • Cancer and Mutations
  • Cancer Cells, Mutagens, and Carcinogens
  • Cell Cycle - Regulation II
  • Transcript (PDF)
21
  • Mutagens and Carcinogens
  • Transcript (PDF)
22
  • Antibody Production
  • Antibody/Immunoglobulin Structure
  • Immune Response - Mechanism
  • Immune Response - Primary and Secondary
  • Viral Infections and Vaccines
  • Transcript (PDF)
23
  • Antibody Variability and VDJ Recombination
  • Humoral and Cellular Immunity
  • Immunology - Definitions and Clonal Expansion
  • Implications of Antibody Variability
  • Macrophage and T Helper Cells I
  • Transcript (PDF)
24
  • AIDS and HIV
  • Macrophage and T Helper Cells II
  • T Cell-B Cell Interaction
  • Transcript (PDF)
25
  • Evolutionary Genomic Analysis
  • Transcript (PDF)
26
  • Action Potential Mechanism
  • Neurobiology - Concentration Gradients and Membrane Proteins
  • Neurobiology - Electrical Signals
  • Neurobiology - Introduction
  • Neuron Structure
  • Propagating Action Potential
  • Transcript (PDF)
27
  • Nerve-Nerve Synapse
  • Neural Circuitry
  • Post-Synaptic Cell/ Muscle-Nerve Synapse
  • Synaptic Transmission
  • Transcript (PDF)
29
  • Growth and Differentiation
  • Stem Cells - Hematopoiesis
  • Stem Cells - Self Renewal
  • Transcript (PDF)
32
  • Cohen Y Chromosome
  • Darwinian Model
  • Genetic Evidence for Evolution and Evolutionary Trees
  • Genetics of Small Populations
  • Human Migration and the Out-of-Africa Theory
  • Mitochondrial DNA and Y Chromosome
  • Polymorphisms
  • Transcript (PDF)
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7.013 Introductory Biology, Spring 2006

7.013 Video Files
LEC AP TOPICS COVERED DOWNLOADABLE MEDIA
19
  • Complexity in Development
  • Development - Overview
  • Examples of Processes in Development
  • Genes Control Development I
  • Genes Control Development II
  • Multiple Steps to Final Fate
  • Processes in Development
  • Regeneration and Stem Cells
  • Regulatory Factors During Development
  • Teratogens
  • Zebrafish Embryonic Development
  • Transcript (PDF)
23
  • Definitions in Development
  • Embryonic Stem (ES) Cells
  • Stem Cells - Definition and Self Renewal
  • Stem Cells - Discovery and Examples
  • Stem Cells - Regulation by Gene Expression
  • Stem Cells - Repopulation/Transplant Assays
  • Stem Cells - Sample Lineages
  • Stem Cells - Tissue Repair
  • Transcript (PDF)

 

7.013 Audio Files (from Spring 2005)

7.013 Audio Files (from Spring 2005)
LEC AP TOPICS COVERED DOWNLOADABLE MEDIA
3
  • Introduction to Polymers and Bonds
  • Lipids
  • Carbohydrates
  • Nucleic Acids
  • Transcript (PDF)
5
  • Introduction to Enzymes
  • Reaction Energetics and Enzymes
  • Enzyme Function and Specificity
  • Regulation of Enzyme Function
  • Enzyme -- Activators and Inhibitors
  • Transcript (PDF)
7
  • Genes and Chromosomes
  • Stages of Meiosis
  • Meiotic Recombination
  • Errors in Meiosis
  • Introduction to Mendelian Genetics
  • Transcript (PDF)
8
  • Definitions in Genetics
  • Mendel's First Law
  • Mendel's Second Law
  • Genetic Linkages
  • Transcript (PDF)
9
  • Dominance
  • Course Org
  • Patterns of Inheritance
  • Examples of Inheritance
  • Framework for Studying Inheritance
  • Penetrance
  • Transcript (PDF)
11
  • Central Dogma
  • DNA Repair
  • The RNA Molecule
  • Gene and RNA Classes
  • Transcription
  • Problems in Transcription
  • Transcript (PDF)
12
  • Silence
  • Promoters, Introns, Exons, and Splicing
  • Gene Expression -- Translation
  • Ribosomes
  • mRNA and Initiation of Translation
  • Elongation and Termination of Translation
  • Mutations -- Genotype to Phenotype
  • Transcript (PDF)
13
  • "How to" Guide to Genetic Engineering
  • Restriction Enzymes
  • Gel Electrophoreisis
  • DNA Transformation
  • Transcript (PDF)
14
  • Silence
  • Review
  • DNA Transformation
  • Polymerase Chain Reaction
  • cDNA cloning
  • Transcript (PDF)
19
  • The Cell Cycle
  • History of the Exploration of the Cell Cycle
  • Checkpoints
  • Cell Death
  • Transcript (PDF)
20
  • Final Formation of Skeletal Muscle Cells
  • Sexual Reproduction and Fertilization
  • Gametogenesis
  • Male Reproductive System
  • Female Reproductive System
  • Hormonal Control of Gametogenesis
  • Process of Fertilization
  • Transcript (PDF)
21
  • Review of Video Lecture 19
  • Differentiation of Skeletal Muscle Cells
  • Gene Family
  • Gene Expression
  • Fate Mapping
  • Determination Assay
  • Dorsal Determination
  • Germ Layers and the Dorsal Mesoderm
  • Experiments with Network of Regulators
  • Transcript (PDF)
22
  • Three Dimensional Structures and Function
  • Cells as the Building Block
  • Adhesion and Junctions
  • Extracellular Matrix
  • Cytoskeleton
  • 3D structure
  • Transcript (PDF)
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7.014 Introductory Biology, Spring 2005

These files are also available on iTunes® and YouTube™.

7.014 Video Files
LEC AP TOPICS COVERED DOWNLOADABLE MEDIA
1
  • Levels of Biological Studies
  • Levels of Multicellular Organisms
  • Origin of Life
  • Prokaryotic and Eukaryotic Cells
  • Transcript (PDF)
2
  • Carbohydrates - Overview
  • Cell Composition
  • Chirality
  • Covalent Bond
  • Hydrogen Bond
  • Transcript (PDF)
3
  • Hydrophobic Effects
  • Ionic Bond and van der Waals (VDW) Interaction
  • Nucleic Acids - DNA and RNA
  • IntrodProtein Primary and Secondary Structures Iuction
  • Proteins and Amino Acids
  • Transcript (PDF)
4
  • Autotrophs and Heterotrophs
  • Cell Characteristics
  • Lipids and Phospholipid Bilayer
  • Protein Functions
  • Protein Primary and Secondary Structure II
  • Protein Quaternary Structure
  • Protein Tertiary Structure
  • Transcript (PDF)
5
  • Activation Energy and Enzymes
  • Coupled Reactions
  • Fermentation
  • Reactions - Thermodynamics and Gibbs Free Energy
  • Transcript (PDF)
6
  • ATP
  • Glycolysis
  • Pyruvate Conversion
  • Redox Reaction
  • Transcript (PDF)
7
  • Citric Acid Cycle and the Mitochondrion
  • Fatty Acid Synthesis from Glycolytic Intermediates
  • Forms of Energy and Proton Gradient
  • Glycolysis and Pyruvate Conversion
  • Oxidative Phosphorylation
  • Regulation of Glycolysis
  • Respiration
  • Transcript (PDF)
8
  • DNA - Overview
  • Genes
  • Genetic Material - Avery's Experiment
  • Genetic Material - Griffith's Experiment
  • Photosynthesis Release I
  • Photosynthesis Release II
  • Transcript (PDF)
9
  • DNA Content - Chargaff's Experiment
  • DNA Structure - Watson and Crick I
  • DNA Structure - Watson and Crick II
  • Meselson-Stahl Experiment
  • Transcript (PDF)
10
  • DNA Replication - DNA Polymerase
  • DNA Replication - Replication Fork
  • Transcript (PDF)
11
  • Cancer
  • DNA Repair
  • DNA Replication - Fidelity
  • DNA Replication - Initiation
  • Information Storage in DNA
  • Transcript (PDF)
12
  • DNA to Protein
  • Genetic Code
  • Messenger RNA (mRNA)
  • Protein Synthesis
  • Transcriptional Regulation
  • Transfer RNA (tRNA) and Codons
  • Transcript (PDF)
13
  • Cell Regulatory Decisions
  • Lactose Metabolism
  • Ribozyme
  • RNA Splicing
  • RNA Splicing - Examples
  • RNA Viruses and HIV
  • The Central Dogma
  • Transcript (PDF)
14
  • Gene Regulation - Positive and Negative
  • Gene Regulation - Positive Regulation
  • Lactose Operon and Regulatory Components II
  • Promotors
  • Transcript (PDF)
15
  • Bacteriophage
  • Genetics and Biochemical Pathways
  • Genetics - Definitions
  • Mutant Analysis - Complementation Test
  • Mutant Analysis - Recombination Test
  • Transcript (PDF)
16
  • Biogeochemistry
  • Emergent Properties
  • Molecular Ecology
  • Organism/Environment Interaction
  • Overview of Ecology
  • Transcript (PDF)
17
  • Autotrophs and the Calvin Cycle
  • Carbon and Energy Sources - Introduction
  • Chemosynthesis
  • Heterotrophs and Aerobic and Anaerobic Respiration
  • Oxygenic and Anoxygenic Photosynthesis
  • System for Bacteria
  • Transcript (PDF)
18
  • Comparison of Ecosystems
  • Food Web and Energy Transfers
  • Primary Productivity
  • World Net Productivity
  • Transcript (PDF)
19
  • Biosynthesis and Regeneration
  • Importance of Nutrients
  • Lake Ecosystems and Mixing
  • Ocean Nutrient Renewal
  • Terrestrial Ecosystems
  • Water Column
  • Transcript (PDF)
20
  • Biogeochemical Cycles - Overview
  • Geological Cycle
  • Global Carbon Cycle
  • Global Nitrogen Cycle
  • Global Phosphorous Cycle
  • Water Cycle
  • Transcript (PDF)
21
  • Mendel's Experiments
  • Mendel's Law of Segregation
  • Transcript (PDF)
22
  • Cell Cycle and Regulation
  • Chromosomal Theory of Inheritance I
  • Chromosome and Mitosis
  • Meiosis - Overview
  • Non-Disjunction
  • Transcript (PDF)
23
  • Chromosomal Theory of Inheritance II
  • Genetic Recombination and Genetic Maps
  • Human Genetics and Pedigrees
  • Mendel's Law of Independent Assortment
  • Sex Linkage
  • Transcript (PDF)
24
  • Cloning by Complementation
  • Cloning Genes - Overview
  • Cloning Genes - Steps
  • Discovery of Restriction Enzymes
  • Recombinant DNA - Libraries I
  • Restriction Enzymes I
  • Transcript (PDF)
25
  • DNA Sequencing I
  • Gel Electrophoresis and Restriction Maps
  • Polymerase Chain Reaction (PCR)
  • Transcript (PDF)
26
  • Cloning by Hybridization/Sequence
  • Cloning by Position
  • Recombinant DNA for Eukaryotes I
  • Recombinant DNA - Libraries II
  • Restriction Enzymes II
  • Vectors/Plasmids
  • Transcript (PDF)
27
  • Adaptive Immune System
  • DNA Sequencing II
  • Recombinant DNA for Eukaryotes II
  • Transcript (PDF)
28
  • Antibodies and VDJ Recombination
  • Clonal Selection, Plasma and Memory Cells
  • Humoral Versus Cellular Immunity
  • Pathogen Elimination
  • T Cells
  • Tolerance of Self Peptides
  • Transcript (PDF)
29
  • Age Structure
  • Cohort Life Tables - Definitions and Analysis
  • Exponential Population Growth and Stable Age Distribution
  • Measure Abundance
  • Population Ecology - Introduction
  • Transcript (PDF)
30
  • Carrying Capacity of the Earth
  • Demographic Transition
  • Global Population Study
  • Human Population Growth I
  • Logistic Versus Exponential Equation
  • Time Lag
  • US Population Study
  • Transcript (PDF)
31
  • Endosymbiosis Theory
  • Life on Earth
  • Molecular Ecology
  • Molecular Evolution
  • Universal Phylogenetic Trees
  • Transcript (PDF)
32
  • Environmental Genomes
  • Genomics
  • In Situ Identification of Micro-organisms
  • Insights Gained from Genomics
  • Transcript (PDF)
33
  • Character Displacement
  • Community Ecology
  • Competition
  • Competition Experiment
  • Ecological Niche
  • Invasive Species and Competitive Exclusion
  • Species Interactions
  • Transcript (PDF)
34
  • Evolution - Interspecific Competition
  • Predation
  • Predation and Community Structure
  • Transcript (PDF)
35
  • Mutualism
  • Predation and Evolution
  • Transcript (PDF)
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