1 00:00:01 --> 00:00:03 I am the other half of the teaching team for 7.01. 2 00:00:03 --> 00:00:06 You've already gotten to meet my good colleague Bob Weinberg. 3 00:00:06 --> 00:00:09 My name is Eric Lander. And Bob and I are both faculty here in the 4 00:00:09 --> 00:00:12 Biology Department. In fact, we're both members over at 5 00:00:12 --> 00:00:15 the Whitehead Institute for Biomedical Research. 6 00:00:15 --> 00:00:19 In fact, we just spent the whole weekend together at the Whitehead 7 00:00:19 --> 00:00:22 Retreat. And so, Bob and I have been doing this 8 00:00:22 --> 00:00:25 course together for a number of years. And we very much 9 00:00:25 --> 00:00:28 love it. I am -- I'll take a brief moment and 10 00:00:28 --> 00:00:31 introduce myself, since I haven't had the opportunity 11 00:00:31 --> 00:00:35 to do so yet. I am by training, well, actually, I'm really a 12 00:00:35 --> 00:00:38 geneticist. By training I'm actually a pure mathematician. 13 00:00:38 --> 00:00:41 That was actually what my undergraduate degree was in, 14 00:00:41 --> 00:00:45 and even my PhD was in, but then wandered into biology. 15 00:00:45 --> 00:00:48 And for the last almost 20 years, I have been doing genetics in some 16 00:00:48 --> 00:00:51 form or another. So I love genetics and look forward 17 00:00:51 --> 00:00:55 to talking a lot about genetics. And it's really lovely that my 18 00:00:55 --> 00:00:58 first lecture today is actually going to be our first introduction 19 00:00:58 --> 00:01:01 to genetics. I am -- Just for other backgrounds, 20 00:01:01 --> 00:01:05 I direct this new Broad Institute that is here. And it's actually a 21 00:01:05 --> 00:01:08 joint institute between MIT and Harvard. And you will know it now 22 00:01:08 --> 00:01:12 as a hole in the ground next to Legal Seafood. 23 00:01:12 --> 00:01:15 If you see a bunch of cranes and things opposite the biology building 24 00:01:15 --> 00:01:19 and opposite Legal Seafood next to the Whitehead, 25 00:01:19 --> 00:01:23 that's the Broad Institute. And we have ambition some day to be 26 00:01:23 --> 00:01:26 more than the hole in the ground but to actually rise above the ground. 27 00:01:26 --> 00:01:30 And the Broad is about genomic medicine and using genomes 28 00:01:30 --> 00:01:33 and things like that. And the Broad Institute includes 29 00:01:33 --> 00:01:36 this center at MIT that was one of the leading participants in the 30 00:01:36 --> 00:01:40 Human Genome project. So that's a lot of what I do with 31 00:01:40 --> 00:01:43 my day job, in addition to teaching, is work on things like the Human 32 00:01:43 --> 00:01:46 Genome project. And, now that we actually have a 33 00:01:46 --> 00:01:49 sequence to the human genome, figuring out what in the world it 34 00:01:49 --> 00:01:53 all means. And I hope I'll get a chance to tell you, 35 00:01:53 --> 00:01:56 during the course of this class, about the human genome and about 36 00:01:56 --> 00:01:59 what's in it and things like that. Like I say, that's one of the things 37 00:01:59 --> 00:02:02 I tremendously love about teaching biology as opposed, 38 00:02:02 --> 00:02:05 if I can get in trouble, to any of the other required 39 00:02:05 --> 00:02:09 introductory courses, is that our curriculum changes every 40 00:02:09 --> 00:02:12 year because the field is moving so rapidly. I look back at what we 41 00:02:12 --> 00:02:15 taught ten years ago in this course, because I've been teaching it that 42 00:02:15 --> 00:02:18 long, and all sorts of open questions now we know the answers to 43 00:02:18 --> 00:02:21 and are part of the curriculum. Some of the things we thought we 44 00:02:21 --> 00:02:24 knew we now know are false and we know new things. 45 00:02:24 --> 00:02:28 And every year we get to introduce new stuff. 46 00:02:28 --> 00:02:32 And I know, I mean with all due respect to calculus, 47 00:02:32 --> 00:02:37 it's just not the case for calculus that there's anything really new to 48 00:02:37 --> 00:02:42 introduce. Most of it sort of settled down about three or four 49 00:02:42 --> 00:02:47 centuries ago. And, you know, 50 00:02:47 --> 00:02:52 that's just not the case with what we do. Anyway, 51 00:02:52 --> 00:02:57 so that's why I love it. All right. So Bob has been talking 52 00:02:57 --> 00:03:02 to you about biochemistry largely. And I'm going to now turn to 53 00:03:02 --> 00:03:06 genetics. But I want you to understand that that is an 54 00:03:06 --> 00:03:11 overarching framework that explains how all the materials you're going 55 00:03:11 --> 00:03:15 to see, at least in the first half or more of this course fit together. 56 00:03:15 --> 00:03:20 And Bob may have mentioned it, but I'm going to mention it again, 57 00:03:20 --> 00:03:24 I would use this following diagram as kind of our roadmap or subway map 58 00:03:24 --> 00:03:29 of where we're going in this course. What we really want to do is 59 00:03:29 --> 00:03:33 understand biological function. That's what we most want. How is 60 00:03:33 --> 00:03:37 it that an organism is able to breathe in air and distribute it to 61 00:03:37 --> 00:03:41 its cells? How is it that an organism is able to move its muscles? 62 00:03:41 --> 00:03:45 How is it that an organism is able to fight off invaders to its body, 63 00:03:45 --> 00:03:50 microbes, things like that? How is it that an embryo develops into a 64 00:03:50 --> 00:03:54 full adult? Zillions of questions. That's what I mean by biological 65 00:03:54 --> 00:03:58 function. The two complimentary approaches to studying biological 66 00:03:58 --> 00:04:02 function, over the course of the past century or so in biology, 67 00:04:02 --> 00:04:07 have been the following. There have been the biochemists. 68 00:04:07 --> 00:04:11 Biochemistry seeks to break down the organism into individual 69 00:04:11 --> 00:04:15 components and study them on their own in a test tube. 70 00:04:15 --> 00:04:19 They will take an organisms, and to a biochemist wishing to study 71 00:04:19 --> 00:04:23 the beauty of a butterfly flapping in the wind and understanding all of 72 00:04:23 --> 00:04:28 the mechanics of how it could possibly flap those wings and all, 73 00:04:28 --> 00:04:32 he or she would start by taking the butterfly, putting it in the blender, 74 00:04:32 --> 00:04:36 pressing puree and making an extract, and trying to purify individual 75 00:04:36 --> 00:04:40 components that would explain muscles moving back and 76 00:04:40 --> 00:04:45 forth and all that. This is, of course, 77 00:04:45 --> 00:04:50 a geneticist's point of view, but it's all right. You have Bob 78 00:04:50 --> 00:04:55 who will represent biochemistry just fine. And they want to purify out 79 00:04:55 --> 00:05:00 individual components. Individual components away from the 80 00:05:00 --> 00:05:04 organism. And the most important individual 81 00:05:04 --> 00:05:07 type of component that they study are proteins because there are 82 00:05:07 --> 00:05:10 zillions of proteins and they do all sorts of things in the body. 83 00:05:10 --> 00:05:13 And so you could say, in some sense, that this whole theme of 84 00:05:13 --> 00:05:17 biochemistry, which got started at the turn of the 20th century, 85 00:05:17 --> 00:05:20 really just a few years before the turn of the 20th century, 86 00:05:20 --> 00:05:23 of grinding up an organism, studying its components and being 87 00:05:23 --> 00:05:26 able to find, for example, I want to understand how I can 88 00:05:26 --> 00:05:30 digest lunch. Well. Or how yeast can digest the sugar. 89 00:05:30 --> 00:05:35 Grind up yeast, fractionate it and find some protein that's able to 90 00:05:35 --> 00:05:40 digest the sugar all by itself without the rest of the organism, 91 00:05:40 --> 00:05:45 an enzyme to do that. That's the logic of biochemistry. 92 00:05:45 --> 00:05:50 Genetics is the complimentary point of view. Genetics is the study of 93 00:05:50 --> 00:05:55 organisms minus one component. Of course, what I mean by that are 94 00:05:55 --> 00:05:59 mutants. The geneticist who wants to 95 00:05:59 --> 00:06:03 understand the butterflies and how the butterfly can fly would isolate 96 00:06:03 --> 00:06:06 butterfly strains that have lost the ability to fly. 97 00:06:06 --> 00:06:10 And ideally one is extremely closely related to the normal 98 00:06:10 --> 00:06:13 butterfly, but for some reason, ideally due to the mutation of a 99 00:06:13 --> 00:06:16 single component they're now unable to fly. And the geneticist would 100 00:06:16 --> 00:06:20 then say, ah-ha, that component must matter an awful 101 00:06:20 --> 00:06:23 lot for the ability to fly because the butterfly that lacks that 102 00:06:23 --> 00:06:27 component cannot fly. It's a totally complimentary point 103 00:06:27 --> 00:06:31 of view. And the objects the geneticists 104 00:06:31 --> 00:06:35 study in order to do that are genes. Now, what is of course hard for you 105 00:06:35 --> 00:06:39 guys to understand but will form a structure for some of the lectures 106 00:06:39 --> 00:06:43 that I'm going to give over the continuing part of this course, 107 00:06:43 --> 00:06:47 is that through most of the 20th century the folks who studied 108 00:06:47 --> 00:06:51 biochemistry and tried to understand proteins and the folks who studied 109 00:06:51 --> 00:06:55 genetics and tried to understand mutants had nothing to say to each 110 00:06:55 --> 00:07:00 other. They didn't speak the same language. 111 00:07:00 --> 00:07:04 They had nothing to relate to each other by because there was no idea 112 00:07:04 --> 00:07:09 of how this gene stuff, which started as a totally abstract 113 00:07:09 --> 00:07:14 business, could possibly relate to this protein stuff which started as 114 00:07:14 --> 00:07:19 a very practical in the test-tube thing. And they went for a very 115 00:07:19 --> 00:07:23 long time as if they were just ships sailing in the dark unaware of each 116 00:07:23 --> 00:07:28 other. And I exaggerate, but it's more true than not. 117 00:07:28 --> 00:07:33 The great intellectual event was the unification of these two points 118 00:07:33 --> 00:07:38 of view through the discipline of molecular biology. 119 00:07:38 --> 00:07:41 Molecular biology was the discipline that realized, 120 00:07:41 --> 00:07:45 oh, my goodness, these are two different sides of the 121 00:07:45 --> 00:07:48 same coin. That, in fact, genes encode proteins, 122 00:07:48 --> 00:07:52 proteins are encoded by genes. Ah-ha. This was a wonderful and 123 00:07:52 --> 00:07:56 important thunder clap in the 20th century. Now, 124 00:07:56 --> 00:08:00 it was a theoretical piece of information at first. 125 00:08:00 --> 00:08:04 The idea that genes and proteins were related in this way was 126 00:08:04 --> 00:08:08 abstract, very important, but you couldn't do anything really 127 00:08:08 --> 00:08:12 with it, because it turned out you couldn't actually work with 128 00:08:12 --> 00:08:16 individual genes. The next great revolution of the 129 00:08:16 --> 00:08:20 20th century was a technological revolution that let you actually 130 00:08:20 --> 00:08:24 work with genes. And that was the recombinant DNA 131 00:08:24 --> 00:08:28 revolution in which the tools to be able to study genes on their own 132 00:08:28 --> 00:08:32 away from the organism, study proteins, use genes to figure 133 00:08:32 --> 00:08:37 out what protein they encode, given a protein and figure out what 134 00:08:37 --> 00:08:41 the gene is, given a gene and actually go in and make a mutant in 135 00:08:41 --> 00:08:45 it, not wait for a random one to rise in the lab but deliberately 136 00:08:45 --> 00:08:50 knock it out, all of that operationalized this intellectual 137 00:08:50 --> 00:08:54 procedure, this intellectual framework. So that is, 138 00:08:54 --> 00:08:59 in some sense, a roadmap to coming lectures that I'm going to give. 139 00:08:59 --> 00:09:02 I'm going to talk about genetics, I'm going to talk about molecular 140 00:09:02 --> 00:09:05 biology, and I'm going to talk about recombinant DNA. 141 00:09:05 --> 00:09:08 That's the structure of the next several weeks of this course. 142 00:09:08 --> 00:09:11 And what I want you to do is to recognize that although we're going 143 00:09:11 --> 00:09:14 to dive down into the individual components of it, 144 00:09:14 --> 00:09:17 everything we're going to do over the coming weeks fits into this very 145 00:09:17 --> 00:09:20 amazing intellectual framework. And this is the intellectual 146 00:09:20 --> 00:09:23 framework that you inherit as the new students coming into this field 147 00:09:23 --> 00:09:26 and going into the 21st century is all this was worked out 148 00:09:26 --> 00:09:29 in the last century. You now have an understanding of how 149 00:09:29 --> 00:09:32 all these pieces fit together, or at least you will, how these can 150 00:09:32 --> 00:09:36 be used to study biological function and, as I will also talk about, 151 00:09:36 --> 00:09:39 the recombinant DNA has grown into a world of genomics that has given us 152 00:09:39 --> 00:09:42 the complete picture of all of the components. It's actually not bad. 153 00:09:42 --> 00:09:45 You were very wise to have shown up when you did because an awful lot of 154 00:09:45 --> 00:09:48 that groundwork has now been laid. You know, if you would have come 155 00:09:48 --> 00:09:52 along 50 years earlier, you know, all that would have been 156 00:09:52 --> 00:09:55 slogged through. Right now you have this laid out 157 00:09:55 --> 00:09:58 for you very nicely. And that's sort of what the theme 158 00:09:58 --> 00:10:02 will be. OK? I would ask are there any questions, 159 00:10:02 --> 00:10:07 but there should be a zillion questions about that. 160 00:10:07 --> 00:10:11 This is just intended as a framework there. 161 00:10:11 --> 00:10:16 So let's now dive in. Section 1. And I'll give a bit 162 00:10:16 --> 00:10:21 more background today than I will in some of the other lectures, 163 00:10:21 --> 00:10:26 but we've got to get going. What I really want to do first is talk 164 00:10:26 --> 00:10:31 about, in fact, most of today will be about Mendel. 165 00:10:31 --> 00:10:34 I confess, Mendel is my hero. He is one of my absolute heroes in 166 00:10:34 --> 00:10:38 science. I just love Mendel. And so I'll dwell on him a little 167 00:10:38 --> 00:10:42 bit today. Now, here's the problem with trying to 168 00:10:42 --> 00:10:46 tell you about Mendel. You already know about Mendel, 169 00:10:46 --> 00:10:49 right? Who here hasn't met Mendel and the peas and the stuff and all 170 00:10:49 --> 00:10:53 that in their high school textbooks? So what am I doing talking about 171 00:10:53 --> 00:10:57 Mendel today? Well, I think what you learn about Mendel 172 00:10:57 --> 00:11:01 in the textbooks in high school does not really bring out what really 173 00:11:01 --> 00:11:05 went on with Mendel's thinking, what's really important about those 174 00:11:05 --> 00:11:09 experiments, what's really interesting. 175 00:11:09 --> 00:11:13 And so I want to ask you to put aside what you think you know about 176 00:11:13 --> 00:11:17 Mendel and let's go back over the setting of who Mendel was, 177 00:11:17 --> 00:11:21 what he was doing, how it all adds up. Because I think in Mendel you 178 00:11:21 --> 00:11:25 can find just the seeds of how to do great science. 179 00:11:25 --> 00:11:29 Now, for starters let me clear up, I'll take five minutes to clear up, 180 00:11:29 --> 00:11:33 four minutes to clear up some misconceptions about Mendel. 181 00:11:33 --> 00:11:37 It has generally been written that Mendel was this monk working in this 182 00:11:37 --> 00:11:41 monastery often in the Chez Republic, at that point in the 183 00:11:41 --> 00:11:45 Austro-Hungarian Empire, and he was isolated, working by 184 00:11:45 --> 00:11:50 himself, and it was amazing he discovered all this stuff. 185 00:11:50 --> 00:11:54 It's nonsense. Mendel working on genetics was no accident. 186 00:11:54 --> 00:11:58 It was the result of extraordinary historical and economic forces over 187 00:11:58 --> 00:12:03 the course of about three centuries that culminated Mendel. 188 00:12:03 --> 00:12:06 Let me briefly explain why. It starts with the Age of 189 00:12:06 --> 00:12:09 Exploration. Europe starts sending out boats around the world, 190 00:12:09 --> 00:12:12 explorers to meet other parts of the world in the 1500s. 191 00:12:12 --> 00:12:16 The boats come back. They bring back stories of amazing 192 00:12:16 --> 00:12:19 lands. They also bring back odd plants, odd animals. 193 00:12:19 --> 00:12:22 People begin to look at these plants and animals. 194 00:12:22 --> 00:12:25 They begin to cross them, grow them and cross them, and look 195 00:12:25 --> 00:12:29 at the weird odd combinations of things that are going on. 196 00:12:29 --> 00:12:32 And they say, wow, there's so much more variation out 197 00:12:32 --> 00:12:36 in the world than we thought about. Some of it's kind of useful. We 198 00:12:36 --> 00:12:39 can make new kinds of varieties of plants different than we had before, 199 00:12:39 --> 00:12:43 new kinds of varieties of apples. Now, it turns out that's not just an 200 00:12:43 --> 00:12:46 intellectual curiosity that that was the case because economics was 201 00:12:46 --> 00:12:50 changing in the face of Europe in the 1600s and in the 1700s with 202 00:12:50 --> 00:12:54 better transportation networks. So if you happen to be able to make 203 00:12:54 --> 00:12:57 a better apple, it was good, not just for your 204 00:12:57 --> 00:13:01 family, but you would be able to project that through lines of 205 00:13:01 --> 00:13:05 distribution to larger markets. It became economically sensible to 206 00:13:05 --> 00:13:09 invest your efforts in producing a better crop because you could sell 207 00:13:09 --> 00:13:13 it to more people because unified markets and transportation systems 208 00:13:13 --> 00:13:17 were developing across Europe. And, therefore, economic forces 209 00:13:17 --> 00:13:21 began to work toward getting a hold on the understanding of how you 210 00:13:21 --> 00:13:25 could do better breeding. Now, this turned out to be 211 00:13:25 --> 00:13:29 particularly important to the folks in Central Europe in the 212 00:13:29 --> 00:13:33 Austro-Hungarian Empire, which was the center of the textile 213 00:13:33 --> 00:13:36 industry. They were particularly concerned, 214 00:13:36 --> 00:13:40 in the late 1700s, about the fact that as the center of the textile 215 00:13:40 --> 00:13:43 industry they had to be concerned about the raw materials like wool 216 00:13:43 --> 00:13:47 that they used. Wool you could get from Central 217 00:13:47 --> 00:13:51 Europe, the Spanish had begun producing by breeding better sheep 218 00:13:51 --> 00:13:54 with better wool. This freaked out the guys in the 219 00:13:54 --> 00:13:58 Austro-Hungarian Empire because they were risking now losing this stuff 220 00:13:58 --> 00:14:02 to the Spanish because of their better sheep. 221 00:14:02 --> 00:14:06 And they began, around 1800, to say we better start 222 00:14:06 --> 00:14:10 understanding how to do breeding. They put together societies to 223 00:14:10 --> 00:14:14 understand better the science of inheritance and breeding. 224 00:14:14 --> 00:14:18 By 1820, a society which was not about sheep but about plants, 225 00:14:18 --> 00:14:22 in fact, apples and grapes, the Pomological and Enological Society 226 00:14:22 --> 00:14:26 of Braunau was organized. Braunau being the capital of the 227 00:14:26 --> 00:14:30 Austro-Hungarian Empire. And this society got all the town 228 00:14:30 --> 00:14:34 fathers of Braunau together. In those days it was just fathers, 229 00:14:34 --> 00:14:38 you know. Together in Braunau and started this society to encourage 230 00:14:38 --> 00:14:42 the scientific study of agricultural inheritance. They had this big 231 00:14:42 --> 00:14:46 dinner and they were drinking and things, and the speech is actually 232 00:14:46 --> 00:14:50 written down where the president gets up and says, 233 00:14:50 --> 00:14:54 "Some day the world may be as indebted as it is to Isaac Newton 234 00:14:54 --> 00:14:58 for physics. They may be as indebted to the City of Braunau for 235 00:14:58 --> 00:15:01 its contributions to inheritance." Which is just eerie to read that in 236 00:15:01 --> 00:15:05 1820 in setting up this society. That was their high hopes for what 237 00:15:05 --> 00:15:08 they would do. In particular, 238 00:15:08 --> 00:15:12 the president of this society, one CF Nap was president of the 239 00:15:12 --> 00:15:15 society as a side job, his main job was he was head of the 240 00:15:15 --> 00:15:19 Augustinian monastery in Braunau. So he began keeping an eye out for 241 00:15:19 --> 00:15:23 bright young math and physic students. Basically, 242 00:15:23 --> 00:15:26 you know, MIT kids coming out of high schools. And he identified a 243 00:15:26 --> 00:15:30 bunch of smart ones and attracted them to the monastery and gave them 244 00:15:30 --> 00:15:33 problems to work on. He particularly was impressed with 245 00:15:33 --> 00:15:37 this relatively poor kid, Gregor Mendel, who had been 246 00:15:37 --> 00:15:40 floundering around with a couple of things, didn't have bright family 247 00:15:40 --> 00:15:44 prospects, and attracted him to the monastery to work on problems of 248 00:15:44 --> 00:15:47 inheritance. So this was no accident. This was a biotech 249 00:15:47 --> 00:15:51 incubator that had been set up in the Austro-Hungarian Empire. 250 00:15:51 --> 00:15:54 Not of the sort we'd recognize today, but it's just fascinating to 251 00:15:54 --> 00:15:58 realize Mendel was not in a vacuum at all. He knew what 252 00:15:58 --> 00:16:01 he was doing here. He really wanted, 253 00:16:01 --> 00:16:05 for the good of mankind, to understand how to improve 254 00:16:05 --> 00:16:09 inheritance. But why do we celebrate Mendel today? 255 00:16:09 --> 00:16:13 We celebrate Mendel today because he went about it, 256 00:16:13 --> 00:16:16 lots of people were interested in this problem, right? 257 00:16:16 --> 00:16:20 You could probably find hundreds of people who tried to do something on 258 00:16:20 --> 00:16:24 this problem. Mendel was different because he went about it as a 259 00:16:24 --> 00:16:28 scientist. He went about it with a rigor and a persistence unlike all 260 00:16:28 --> 00:16:32 of his peers at the time. So let's think about what it was 261 00:16:32 --> 00:16:36 that Mendel did. So, anyway, forgive me for the 262 00:16:36 --> 00:16:40 historical digression, but I think it's interesting. 263 00:16:40 --> 00:16:44 What did Mendel do? Mendel started by taking peas. 264 00:16:44 --> 00:16:49 Now, he went off to the market and he got different varieties of peas. 265 00:16:49 --> 00:16:53 And he brought back all of these varieties of peas and he tried 266 00:16:53 --> 00:16:57 growing them. Now, actually, although I don't have the 267 00:16:57 --> 00:17:02 records, I'm sure he did lots more than peas. 268 00:17:02 --> 00:17:05 He brought probably lots of stuff and he tried growing it. 269 00:17:05 --> 00:17:09 And the first order of question he wanted to ask is if I study 270 00:17:09 --> 00:17:12 inheritance, I've got to start with something that has constant 271 00:17:12 --> 00:17:16 properties. This seems obvious to you guys, but it was not at all 272 00:17:16 --> 00:17:20 obvious at the time that the most important thing you could do, 273 00:17:20 --> 00:17:23 if you wanted to understand the transmission of traits and crosses 274 00:17:23 --> 00:17:27 and inheritance and all that, is not to set up any crosses. It 275 00:17:27 --> 00:17:31 was first to set up your experimental system and make sure it 276 00:17:31 --> 00:17:35 was rock solid. He probably devoted years to getting 277 00:17:35 --> 00:17:39 varieties of different plants, and in particular settling on peas, 278 00:17:39 --> 00:17:44 with a property that when he had peas with different traits, 279 00:17:44 --> 00:17:48 like whether or not the pea seed was round or wrinkled, 280 00:17:48 --> 00:17:53 which will be some of our favorite traits here, that when you simply 281 00:17:53 --> 00:17:57 selfed this plant, crossed it to itself and looked at 282 00:17:57 --> 00:18:02 the next generation, it bred true. Hard to emphasize how important that 283 00:18:02 --> 00:18:08 was, but this was careful experimental design. 284 00:18:08 --> 00:18:14 So many biological projects fail 285 00:18:14 --> 00:18:17 because people don't take the trouble to set up a system that's 286 00:18:17 --> 00:18:20 rock solid. They set up a system that's noisy and you're not really 287 00:18:20 --> 00:18:23 sure you're going to be able to interpret the data, 288 00:18:23 --> 00:18:27 etc. So Mendel did that. Very good. 289 00:18:27 --> 00:18:31 Always, no matter how long you continued to breed these things, 290 00:18:31 --> 00:18:36 you continued to get round or you continued to get wrinkled. 291 00:18:36 --> 00:18:41 Now Mendel was ready. He was ready to set up his first 292 00:18:41 --> 00:18:52 controlled cross. 293 00:18:52 --> 00:18:57 So what he did was he took a round pea and a wrinkled pea and he 294 00:18:57 --> 00:19:01 crossed them together. Now, that's again some serious work. 295 00:19:01 --> 00:19:04 You first have to go along to one of the peas, cut off its little 296 00:19:04 --> 00:19:07 pollen producing organs so it doesn't self-fertilize because peas 297 00:19:07 --> 00:19:11 will self-fertilize. You've got to cut them off early, 298 00:19:11 --> 00:19:14 make sure it doesn't get its own pollen on it. Then you go over to 299 00:19:14 --> 00:19:17 the other one with a paint brush, you get some pollen and you paint 300 00:19:17 --> 00:19:20 the pollen on the first plant. That's how you set up the cross. 301 00:19:20 --> 00:19:23 If you screw it up you could have self-fertilization or the wind could 302 00:19:23 --> 00:19:26 carry some pollen from something from somewhere else. 303 00:19:26 --> 00:19:30 So it had to be done very carefully. He set it up. 304 00:19:30 --> 00:19:35 And his first big-time observation was? Now, again, 305 00:19:35 --> 00:19:40 I know you know all this, so feel free to chime in. In the 306 00:19:40 --> 00:19:45 next generation all the peas were round. We denote generations with 307 00:19:45 --> 00:19:51 an F. F stands for filial meaning children. We sometimes denote them 308 00:19:51 --> 00:19:56 with a G for generation. Anyway, I tend to use F, 309 00:19:56 --> 00:20:01 and most geneticists tend to use F. The parental generation here is 310 00:20:01 --> 00:20:05 called F0, the first generation is called F1, the second generation F2, 311 00:20:05 --> 00:20:10 etc. So why was this a big deal? This was a huge big deal. 312 00:20:10 --> 00:20:15 If you took a poll, a CNN Gallup poll of Braunau at that time and you 313 00:20:15 --> 00:20:19 ask voters what do you think would happen if I cross a round pea to a 314 00:20:19 --> 00:20:24 wrinkled pea, what do you think the majority of voters would say? 315 00:20:24 --> 00:20:29 Well, maybe half and half or maybe all a little wrinkled, 316 00:20:29 --> 00:20:34 you know, a little puckered or something like that. 317 00:20:34 --> 00:20:37 The notion that one trait would be totally dominant over the other 318 00:20:37 --> 00:20:40 trait was by no means the general thinking. And you know what? 319 00:20:40 --> 00:20:43 It wasn't even the general case. If you took plants, you guys must 320 00:20:43 --> 00:20:46 know. If you take plants and you cross them, the F1 usually looks 321 00:20:46 --> 00:20:49 like some kind of a mix. It's some kind of a blend between 322 00:20:49 --> 00:20:53 the two. And, of course, that's because you're 323 00:20:53 --> 00:20:56 really looking at situations where you're crossing things in which 324 00:20:56 --> 00:20:59 zillions of different traits are being inherited and 325 00:20:59 --> 00:21:03 it's a hodgepodge. But Mendel had a situation here 326 00:21:03 --> 00:21:09 where he got an absolutely crisp dominance of one trait over the 327 00:21:09 --> 00:21:15 other. And so wrinkled completely disappears, round dominates, 328 00:21:15 --> 00:21:24 wrinkled disappears completely. 329 00:21:24 --> 00:21:30 Now, next he does another generation. 330 00:21:30 --> 00:21:35 He goes to the second generation. And here he does this by selfing 331 00:21:35 --> 00:21:41 this plant. That is he simply kind of puts a bag over it and lets its 332 00:21:41 --> 00:21:47 own pollen fertilize itself or he takes a little brush and he brushes 333 00:21:47 --> 00:21:53 its own pollen onto it. And in the next generation his 334 00:21:53 --> 00:21:59 remarkable thing was he saw some rounds and some wrinkles. 335 00:21:59 --> 00:22:12 What was remarkable about that? 336 00:22:12 --> 00:22:16 Wrinkled came back. I thought wrinkled was gone. 337 00:22:16 --> 00:22:19 And it didn't come back in some half-hearted way like a little 338 00:22:19 --> 00:22:23 puckered. It came back fully, totally, every bit as wrinkled as 339 00:22:23 --> 00:22:27 the parental wrinkled. And the rounds were every bit as 340 00:22:27 --> 00:22:31 round. These were discrete traits. 341 00:22:31 --> 00:22:35 Wrinkled reappeared, and it reappeared with no loss. 342 00:22:35 --> 00:22:40 No change in the phenotype, no change in the appearance. And 343 00:22:40 --> 00:22:45 that was very important because at the time some of the predominant 344 00:22:45 --> 00:22:49 models were blending of traits. And you would never imagine, if I 345 00:22:49 --> 00:22:54 were to take grape juice and water and blend them together to get some 346 00:22:54 --> 00:22:59 kind of pinkish thing that I would be able to separate that back out 347 00:22:59 --> 00:23:04 into clear water and deep dark grape juice. 348 00:23:04 --> 00:23:09 But somehow this trait had appeared. Thus, the trait was discrete. Big 349 00:23:09 --> 00:23:14 difference. Big news. This trait could be found still 350 00:23:14 --> 00:23:19 lurking there. It was merely hidden in the first 351 00:23:19 --> 00:23:24 generation. Mendel did one other thing, dear to my heart as someone 352 00:23:24 --> 00:23:29 trained as a mathematician, he counted. When he counted up the 353 00:23:29 --> 00:23:35 rounds and the wrinkles he found what? 354 00:23:35 --> 00:23:44 Sorry? Three to one round to wrinkled? No, 355 00:23:44 --> 00:23:53 it's not. He found 5, 74 to 1,850. That's what he found. 356 00:23:53 --> 00:24:03 Now, what do you recognize about that? 357 00:24:03 --> 00:24:09 Three to one? No, it's not. It's 2.96 to one. 358 00:24:09 --> 00:24:16 It's not three to one. What's this three to one business? 359 00:24:16 --> 00:24:23 [LAUGHTER] Why isn't there a famous 2.96 to one rule? 360 00:24:23 --> 00:24:30 No, no, I'm serious. Mendel did one more thing. He counted. 361 00:24:30 --> 00:24:34 And then he did something a little bit outrageous. 362 00:24:34 --> 00:24:38 He intuited. He said although the data do not say three to one, 363 00:24:38 --> 00:24:42 notwithstanding your textbook, I think the data are trying to tell 364 00:24:42 --> 00:24:46 me it's three to one. [LAUGHTER] This is part of science. 365 00:24:46 --> 00:24:50 I'm sorry? Two sig figs, right. You know, this is actually a 366 00:24:50 --> 00:24:54 big deal because so many people are unwilling to kind of look at their 367 00:24:54 --> 00:24:59 data to say what's the data trying to tell me? 368 00:24:59 --> 00:25:02 And, of course, there are so many people who are too 369 00:25:02 --> 00:25:06 willing to look at their data and say what's the data trying to tell 370 00:25:06 --> 00:25:10 me? Because you can go off the tracks in both directions. 371 00:25:10 --> 00:25:14 So Mendel tried some experiments, 3.04 to one, 2.91 to one, etc. And 372 00:25:14 --> 00:25:18 occasionally, yes? No. How could he? 373 00:25:18 --> 00:25:22 Nobody had done this. He had no textbooks he could 374 00:25:22 --> 00:25:26 consult. So do you think it's possible he experimented with other 375 00:25:26 --> 00:25:30 things that didn't show these properties and said maybe these are 376 00:25:30 --> 00:25:33 lousy traits to work on. I'm getting such good results on 377 00:25:33 --> 00:25:36 wrinkled, let's stay with wrinkled for a while. That is an incredible 378 00:25:36 --> 00:25:39 act of experimental judgment to know that some problems are too 379 00:25:39 --> 00:25:42 complicated, we'll come back to them later. It's not cheating. 380 00:25:42 --> 00:25:45 You get to say this is an interesting problem, 381 00:25:45 --> 00:25:49 I'm going to work on it. Not only that. I'll tell you, 382 00:25:49 --> 00:25:52 occasionally Mendel did these experiments and he got completely 383 00:25:52 --> 00:25:55 abhorrent results. They didn't match three to one at 384 00:25:55 --> 00:25:58 all. You know what he did? He threw out the data. Do you know 385 00:25:58 --> 00:26:01 why? No, not small sample. 386 00:26:01 --> 00:26:04 Large numbers. He's sitting there in this garden. 387 00:26:04 --> 00:26:07 You know, I've actually been to Mendel's monastery. 388 00:26:07 --> 00:26:10 He's in the garden in Braunau. Remember, he's got to go cut off 389 00:26:10 --> 00:26:13 the little pollen producing organs, he's got to paint the stuff. What 390 00:26:13 --> 00:26:16 if he screws up? What if the wind blows and stuff 391 00:26:16 --> 00:26:19 like that? If an experiment was way off, he had to consider the 392 00:26:19 --> 00:26:22 possibility that he just screwed up because he hadn't gotten to it soon 393 00:26:22 --> 00:26:25 enough and pollen had blown in and had fertilized his plants. 394 00:26:25 --> 00:26:28 Now, boy, that's a dangerous thing to do, discarding data. 395 00:26:28 --> 00:26:31 But let's be honest. Sometimes experiments screw up. 396 00:26:31 --> 00:26:34 And if an experimentalist hasn't got enough judgment to know that 397 00:26:34 --> 00:26:37 sometimes you cannot believe the data you also can go wrong. 398 00:26:37 --> 00:26:40 So Mendel, who sometimes is accused for cheating for that, 399 00:26:40 --> 00:26:43 it's not at all cheating. What you have to do is say, 400 00:26:43 --> 00:26:45 OK, I've got a problem here. I'm going to redo this experiment a 401 00:26:45 --> 00:26:48 bunch more times. I'm always getting about this three 402 00:26:48 --> 00:26:51 to one thing, but occasionally I get something that's way off there and I 403 00:26:51 --> 00:26:54 feel comfortable saying that's an error. You can go wrong with that, 404 00:26:54 --> 00:26:57 but Mendel exercised very good judgment in excluding that rather 405 00:26:57 --> 00:27:00 than trying to muck this all up by saying occasionally I 406 00:27:00 --> 00:27:04 get something weird. So I know the textbook summarizes 407 00:27:04 --> 00:27:08 this beautiful 3:1 ratio, but so much creativity. First 408 00:27:08 --> 00:27:12 discipline of counting and creativity of interpretation went 409 00:27:12 --> 00:27:17 into all of this. So in the modern world what would 410 00:27:17 --> 00:27:21 Mendel do? In the modern world, upon seeing this three to one result 411 00:27:21 --> 00:27:25 which he, I will note, he saw for a couple of other traits. 412 00:27:25 --> 00:27:30 Actually, what he did next was he wanted to explain -- 413 00:27:30 --> 00:27:36 This was also part of his brilliance. He made a model, 414 00:27:36 --> 00:27:42 the model of what was going on. Mendel said how can I possibly 415 00:27:42 --> 00:27:48 explain this beautiful observation that for round and wrinkled, 416 00:27:48 --> 00:27:54 and for other traits, I observe an approximately 3:1 ratio in the F0, 417 00:27:54 --> 00:28:00 F1 and F2 generations? Mendel, my heart beats for Mendel. Oh. 418 00:28:00 --> 00:28:03 A mathematician he is. He says let's make a very simple 419 00:28:03 --> 00:28:07 model. Let's assume that there are two factors of the control 420 00:28:07 --> 00:28:11 inheritance of this trait. I'll call them big R and little R. 421 00:28:11 --> 00:28:15 The round plants have big R and big R. They have two copies of this 422 00:28:15 --> 00:28:18 factor that controls shape. The wrinkled plant has two copies 423 00:28:18 --> 00:28:22 of the factor that control shape, and the copy of the factor they get 424 00:28:22 --> 00:28:26 is different. So the flavor here is big R, the flavor here is little R. 425 00:28:26 --> 00:28:30 This has two copies, this has two copies. 426 00:28:30 --> 00:28:34 And let's assume that this plant transmits one at random of its two 427 00:28:34 --> 00:28:39 factors onto the next generation. It will transmit a big R. Let's 428 00:28:39 --> 00:28:43 assume that this transmits one of the two at random. 429 00:28:43 --> 00:28:48 It will transmit a little R. And that plant there in the middle 430 00:28:48 --> 00:28:53 will be big R over little R. And what will big R over little R 431 00:28:53 --> 00:28:57 be as an appearance? How does he know that that's going 432 00:28:57 --> 00:29:02 to be round? Sorry? From the result. 433 00:29:02 --> 00:29:06 He knows because that's what happened. It's not an overwhelming 434 00:29:06 --> 00:29:10 reason. But to make the data work he's got to say, 435 00:29:10 --> 00:29:14 well, then this must be round. OK? So no points for that. He's 436 00:29:14 --> 00:29:19 just fitting the data. Then here, when you self this, 437 00:29:19 --> 00:29:23 the two parental gametes transmit either a big R, 438 00:29:23 --> 00:29:27 so we'll put it over here, big R, big R, little R, little R, 439 00:29:27 --> 00:29:34 they transmit. And the offspring are of that type. 440 00:29:34 --> 00:29:42 You can either get that. Question there? 441 00:29:42 --> 00:29:58 Could be. So he had some knowledge. 442 00:29:58 --> 00:30:01 But, of course, this is his model. 443 00:30:01 --> 00:30:04 He's entitled to make his model. And you're saying he had good 444 00:30:04 --> 00:30:07 reasons to think in these. So everybody knows Mendel's model, 445 00:30:07 --> 00:30:10 right? So, now, in the modern world, the minute you've got data like this 446 00:30:10 --> 00:30:13 and you've got a model to explain it, what do you do? 447 00:30:13 --> 00:30:16 Publish. So Mendel, let's put Mendel as a young 448 00:30:16 --> 00:30:19 assistant professor who is all fired up about these results, 449 00:30:19 --> 00:30:22 writes this up for publication in Nature. It's a short thousand word 450 00:30:22 --> 00:30:25 letter to Nature, let's say. And he races it off, 451 00:30:25 --> 00:30:29 he emails it to the offices of Nature in London. 452 00:30:29 --> 00:30:31 Because he's in Europe, he'll use the London office of 453 00:30:31 --> 00:30:34 Nature saying I have this amazing result, I did these crosses. 454 00:30:34 --> 00:30:37 Here are the results here. And I have a model that explains the data 455 00:30:37 --> 00:30:40 perfectly. What does Nature do? Sorry? Why does it reject it? 456 00:30:40 --> 00:30:43 Well, the first thing he does is sends it out to referees, 457 00:30:43 --> 00:30:46 right? The way that scientific publication works is it chooses two 458 00:30:46 --> 00:30:49 or three anonymous referees. It sends the paper out anonymously 459 00:30:49 --> 00:30:52 to those two or three referees for comment saying we've received this 460 00:30:52 --> 00:30:55 interesting paper from this young monk in Austria. 461 00:30:55 --> 00:30:58 What do you think about it? Give us your opinions? Please 462 00:30:58 --> 00:31:01 write back in two weeks, etc. So you're the referees. 463 00:31:01 --> 00:31:04 You get Mendel's paper. What do you advise Nature? 464 00:31:04 --> 00:31:08 Publish or not? No. Why not? It's outrageous. 465 00:31:08 --> 00:31:11 Why? It's never been heard of. Yeah, that's great. 466 00:31:11 --> 00:31:14 But, I mean, you sound like a very conservative, you know, 467 00:31:14 --> 00:31:18 you cannot write that. You cannot say it's wrong because it's never 468 00:31:18 --> 00:31:21 been heard of. Yeah? Regenerate. 469 00:31:21 --> 00:31:24 It would be wonderful if referees could regenerate the result 470 00:31:24 --> 00:31:28 themselves, but it's not practical. For one thing, it takes a long time 471 00:31:28 --> 00:31:32 to grow peas. They might not have those strains of 472 00:31:32 --> 00:31:36 peas. The best test really would be independent replication of this, 473 00:31:36 --> 00:31:40 but unfortunately you cannot get the referee to reproduce each result 474 00:31:40 --> 00:31:44 before accepting the paper. So you have to go on the own 475 00:31:44 --> 00:31:48 internal results of the paper. Has Mendel proved his case for this 476 00:31:48 --> 00:31:52 model? How many people vote Mendel has proved his case for the model? 477 00:31:52 --> 00:31:56 He's my hero. How many people vote that he hasn't proved the case? 478 00:31:56 --> 00:32:01 How many people are conscience abstainers? [LAUGHTER] 479 00:32:01 --> 00:32:06 OK. Who says he hasn't proved the case? Why? Exactly. 480 00:32:06 --> 00:32:11 I mean, great, the model fits the data. He had the data first and he 481 00:32:11 --> 00:32:16 made a model to fit it. Big deal. So you would say? 482 00:32:16 --> 00:32:21 Yes, he should be able to make a variety of predictions. 483 00:32:21 --> 00:32:26 That would be a confirmation of a model, at least the beginning of a 484 00:32:26 --> 00:32:31 confirmation of a model is he could make some predictions 485 00:32:31 --> 00:32:35 based on a model. But an ex post facto model to 486 00:32:35 --> 00:32:39 explain the data you already have, of course you're going to have one. 487 00:32:39 --> 00:32:42 It might be a little whacky, but you always make a model to explain 488 00:32:42 --> 00:32:46 your data. That's not the hard thing. Now give me some predictions. 489 00:32:46 --> 00:32:49 So, guys, give me some predictions. We write back to Mendel saying we 490 00:32:49 --> 00:32:53 find the author's work to be of interest, it's a provocative and 491 00:32:53 --> 00:32:56 unheard of finding, and it's a fascinating model, 492 00:32:56 --> 00:33:00 but it is just a model. We'd like to see some predictions verified. 493 00:33:00 --> 00:33:04 So what would they be? Sorry? Color. 494 00:33:04 --> 00:33:08 Oh, show me more traits. OK. Fine. We want to see more 495 00:33:08 --> 00:33:12 traits. In addition to seeing some more traits, and Mendel actually did 496 00:33:12 --> 00:33:16 have more traits in the paper. I'm just simplifying here. Prove 497 00:33:16 --> 00:33:20 this model. What predictions would you make if this model is correct? 498 00:33:20 --> 00:33:24 Yes? Keep crossing them. So tell me what you would do. 499 00:33:24 --> 00:33:32 Please send him instructions here. 500 00:33:32 --> 00:33:34 OK, so you would like me to cross one of the rounds, 501 00:33:34 --> 00:33:37 an F2 round by a wrinkled. What will happen in the next 502 00:33:37 --> 00:33:45 generation? 503 00:33:45 --> 00:33:48 How do I do that? I don't have DNA sequencing 504 00:33:48 --> 00:33:51 available or anything, so. [LAUGHTER] See what happens. 505 00:33:51 --> 00:33:54 So what might happen? What is this round plant here? 506 00:33:54 --> 00:33:58 What might it be? And what are the probabilities of 507 00:33:58 --> 00:34:05 that? 508 00:34:05 --> 00:34:10 One-third of the time it will big R, big R. Two-thirds of the time it 509 00:34:10 --> 00:34:15 will be big R, little R. If it is big R, 510 00:34:15 --> 00:34:20 big R then the offspring will all be what? Round. If, 511 00:34:20 --> 00:34:25 on the other hand, it is the case that that's big R, 512 00:34:25 --> 00:34:30 little R then the offspring will all be? 513 00:34:30 --> 00:34:34 They won't be all anything. They'll be half round, a 1:1 ratio 514 00:34:34 --> 00:34:38 of round to wrinkled. OK? That's an odd prediction that 515 00:34:38 --> 00:34:42 a third of the time the offspring from such crosses will all be round 516 00:34:42 --> 00:34:46 and two-thirds of the time the offspring will be 50/50 round and 517 00:34:46 --> 00:34:50 wrinkled. You wouldn't normally think of that, 518 00:34:50 --> 00:34:54 right? That's the kind of thing that has to be done. 519 00:34:54 --> 00:34:58 And Mendel, of course, did crosses like that. I simplified 520 00:34:58 --> 00:35:03 here. This is really what Mendel did was 521 00:35:03 --> 00:35:08 demonstrated that all sorts of predictions would be satisfied. 522 00:35:08 --> 00:35:14 Another prediction that Mendel could make, oops. 523 00:35:14 --> 00:35:19 Stop, stop, stop, stop. Which should be wrinkled? 524 00:35:19 --> 00:35:24 Oh, my goodness. Oh, wrinkle that pea. OK. Onward. 525 00:35:24 --> 00:35:30 Thank you very much, Claudette. That's good. 526 00:35:30 --> 00:35:36 So he made more and more predictions like this. His predictions, 527 00:35:36 --> 00:35:42 for example, let's just take that F1 pea, round over wrinkled here. 528 00:35:42 --> 00:35:49 If you cross this back with wrinkled then it's pretty simply 529 00:35:49 --> 00:35:55 because then always, if this is an F1 as opposed to an F2, 530 00:35:55 --> 00:36:02 you're going to get a 50:50 ratio of round to wrinkled. 531 00:36:02 --> 00:36:06 Moreover, these rounds, if you cross them back, will still 532 00:36:06 --> 00:36:10 give you a 50:50, etc. That's science. 533 00:36:10 --> 00:36:14 That's the heart of science, is being able to look at data, 534 00:36:14 --> 00:36:18 intuit what the data is trying to tell you, build a model and test a 535 00:36:18 --> 00:36:22 model. All of that is in Mendel. OK? So I know you all know Mendel, 536 00:36:22 --> 00:36:26 but this Mendel really. OK? Now, some definitions. 537 00:36:26 --> 00:36:30 I need to give you, so Section 2, some definitions. 538 00:36:30 --> 00:36:36 Because I've been skirting around using some words here. 539 00:36:36 --> 00:36:42 OK? Number one, the word gene. Gene is one of these factors of 540 00:36:42 --> 00:36:59 inheritance controlling a trait. 541 00:36:59 --> 00:37:03 Mendel didn't use the word gene. The word gene came along much later. 542 00:37:03 --> 00:37:07 The variant flavors of a gene, big R and little R, are known as 543 00:37:07 --> 00:37:11 alleles from the Greek word meaning other. These are the alternative 544 00:37:11 --> 00:37:19 forms of a gene. 545 00:37:19 --> 00:37:22 It can come in the form big R, little R. I might write big A, 546 00:37:22 --> 00:37:26 little A. I might write plus for normal and M for mutant. 547 00:37:26 --> 00:37:30 There are a lot of different notations geneticists use for that. 548 00:37:30 --> 00:37:38 The word phenotype means appearance. The plant was round. The peas were 549 00:37:38 --> 00:37:47 round. That's a phenotype. The individual was 7" 7' tall. 550 00:37:47 --> 00:37:55 That's a phenotype. OK? Those are phenotypes. Genotype means the pair 551 00:37:55 --> 00:38:04 of alleles carried by the individual. 552 00:38:04 --> 00:38:11 Big R, little R is a genotype. 553 00:38:11 --> 00:38:16 Big R, big R is a genotype. Little R, little R. Those are genotypes. 554 00:38:16 --> 00:38:20 An important difference between genotype and phenotype. 555 00:38:20 --> 00:38:25 Other important words so that we can actually talk to each other. 556 00:38:25 --> 00:38:31 Homozygous or homozygote. A homozygote is an individual who 557 00:38:31 --> 00:38:38 has a genotype that has two of the same alleles. Two copies of the 558 00:38:38 --> 00:38:45 same allele, the individual is said to be homozygous. 559 00:38:45 --> 00:38:52 And, alternatively, an individual is said to be 560 00:38:52 --> 00:39:00 heterozygous, heterozygote if they have two alternatives. 561 00:39:00 --> 00:39:03 A couple of other important definitions. 562 00:39:03 --> 00:39:11 Dominant. 563 00:39:11 --> 00:39:18 A phenotype round is said to be 564 00:39:18 --> 00:39:23 dominant over a phenotype wrinkled if what? If the heterozygote shows 565 00:39:23 --> 00:39:29 that phenotype, the heterozygote between pure 566 00:39:29 --> 00:39:39 breeding strains. So phenotype one, 567 00:39:39 --> 00:39:53 pheno one is dominant over phenotype two if the F1 of pure breeding 568 00:39:53 --> 00:40:02 strains shows phenotype one. Similarly, we have the word 569 00:40:02 --> 00:40:06 recessive. Now, I'll mention, and you will then 570 00:40:06 --> 00:40:10 proceed to promptly forget, because all of my colleagues forget, 571 00:40:10 --> 00:40:14 dominant and recessive do not refer to alleles. Big R is not dominant. 572 00:40:14 --> 00:40:18 Round is dominant. Big R is an allele. Now, you say who cares? 573 00:40:18 --> 00:40:22 The textbooks get this wrong all the time, it's true. 574 00:40:22 --> 00:40:26 You won't even find the textbooks use this correctly. 575 00:40:26 --> 00:40:30 They will tell you big R is dominant. 576 00:40:30 --> 00:40:34 What if it turned out that big R controlled three different traits? 577 00:40:34 --> 00:40:38 Maybe roundness. An ability to grow with low salt in the soil. 578 00:40:38 --> 00:40:42 An ability to bloom in May. Some of those traits might be recessive. 579 00:40:42 --> 00:40:47 Some of them might be dominant. We know examples of that, 580 00:40:47 --> 00:40:51 where the same allele can control multiple traits, 581 00:40:51 --> 00:40:55 some of which show dominance, some of which show recessiveness. 582 00:40:55 --> 00:40:59 So real card-carrying geneticists try hard to use the word dominant 583 00:40:59 --> 00:41:04 and recessive to refer to phenotypes, not to alleles or genotypes. 584 00:41:04 --> 00:41:07 Now, since 80% of the facility in the Biology Department don't use the 585 00:41:07 --> 00:41:10 word with that degree of precision, I don't have high hope that you will 586 00:41:10 --> 00:41:13 either. But I'm going to try to say the words dominant and recessive 587 00:41:13 --> 00:41:16 refer to phenotypes. OK? This is a geneticists' kind of 588 00:41:16 --> 00:41:19 hang-up. We all have our shtick, but this one of mine, is that these 589 00:41:19 --> 00:41:22 really do refer to phenotypes. And it's quite important because 590 00:41:22 --> 00:41:25 otherwise you could get quite bollixed up. And I'll come to a 591 00:41:25 --> 00:41:28 case with sickle cell anemia where you won't be able to describe the 592 00:41:28 --> 00:41:32 sickle cell anemia allele as recessive, dominant or co-dominant. 593 00:41:32 --> 00:41:36 OK? Good. Those are some definitions. They're worth knowing. 594 00:41:36 --> 00:41:41 If we get those definitions right the rest of it is pretty 595 00:41:41 --> 00:41:53 easy. All right. 596 00:41:53 --> 00:41:56 So Mendel publishes this paper in 1865. It's accepted. 597 00:41:56 --> 00:41:59 It appears not in Nature but in the proceeding the Royal Academy of 598 00:41:59 --> 00:42:02 Braunau and it's published. And what happens? 599 00:42:02 --> 00:42:05 Nothing. It sinks like a stone. Mendel's paper is totally ignored. 600 00:42:05 --> 00:42:09 Nobody really pays any attention to it. This paper was sent to many 601 00:42:09 --> 00:42:12 people. Charles Darwin has a copy of Mendel's papers in his files. 602 00:42:12 --> 00:42:15 But, in those days, the way printing worked, 603 00:42:15 --> 00:42:19 in order to read a book you had to slit the pages open. 604 00:42:19 --> 00:42:22 Darwin never slit the pages of Mendel's paper, 605 00:42:22 --> 00:42:25 so it's pretty clear he never read the paper, even though it had the 606 00:42:25 --> 00:42:29 answer to much of what he wanted to know about evolution. 607 00:42:29 --> 00:42:32 No one really read Mendel's paper because it was so far ahead of its 608 00:42:32 --> 00:42:35 time, it just was pretty strange. It had all these concepts. And, 609 00:42:35 --> 00:42:39 anyway, you could always dismiss it with that kiss of death of biology 610 00:42:39 --> 00:42:42 "it's just the model". Right? You can kill things with 611 00:42:42 --> 00:42:46 "it's just the model". People were just not prepared to 612 00:42:46 --> 00:42:49 deal with Mendel. So Mendel, in fact, 613 00:42:49 --> 00:42:52 poor Mendel, maybe he had a good time, I don't think, 614 00:42:52 --> 00:42:56 instead didn't really do much more on this topic of genetics per se. 615 00:42:56 --> 00:43:00 He became an administrator. Became abbot of the monastery and 616 00:43:00 --> 00:43:05 did other things. Worked on meteorology, 617 00:43:05 --> 00:43:11 etc. And we don't really hear from Mendel again. So what really begins 618 00:43:11 --> 00:43:16 to reignite interest in this is the understanding in the late 1800s of 619 00:43:16 --> 00:43:21 chromosomes. Very briefly, cytologists, people studying cells 620 00:43:21 --> 00:43:27 in the microscope. Cytologists are folks who study 621 00:43:27 --> 00:43:34 cells. They noticed these very funny little 622 00:43:34 --> 00:43:42 structures in cells. They noticed these structures that 623 00:43:42 --> 00:43:50 when you stain then with a dye would stain very funny. 624 00:43:50 --> 00:43:58 They picked up dye in a certain way. And they noticed that they had this 625 00:43:58 --> 00:44:06 very interesting choreography that when a cell underwent mitosis these 626 00:44:06 --> 00:44:14 funny things would divide down the midline and these little x-shaped 627 00:44:14 --> 00:44:22 structures would go to the two daughter cells like this. 628 00:44:22 --> 00:44:28 That is these Xs would become single 629 00:44:28 --> 00:44:32 individual pieces. Again, you know about these things. 630 00:44:32 --> 00:44:36 They had no clue what these were. What is the appropriate scientific 631 00:44:36 --> 00:44:41 procedure when you have no clue what something is? You need to give it a 632 00:44:41 --> 00:44:46 name that somewhat covers up the fact that you have no clue what 633 00:44:46 --> 00:44:50 you're talking about because it sounds much better than just saying 634 00:44:50 --> 00:44:55 they are "these funny things". And so they were referred to as 635 00:44:55 --> 00:45:00 chromosomes, meaning literally colored things. [LAUGHTER] 636 00:45:00 --> 00:45:08 You need to understand these sorts 637 00:45:08 --> 00:45:12 of things. OK? So these chromosomes here, 638 00:45:12 --> 00:45:16 these colored things, for lack of any other knowledge of them, 639 00:45:16 --> 00:45:19 that was the property they could be given. Chromosomes. 640 00:45:19 --> 00:45:23 Look it up. They executed this very interesting choreography during 641 00:45:23 --> 00:45:27 mitosis. That is cell division. Oh, boy, is that going to be noisy. 642 00:45:27 --> 00:45:37 Someone should shoot it and put it 643 00:45:37 --> 00:45:41 out of its misery. [LAUGHTER] All right. 644 00:45:41 --> 00:45:45 But what they then noticed was the following. And we're going to run 645 00:45:45 --> 00:45:50 just a couple of minutes over. I'm going to keep it short. But 646 00:45:50 --> 00:45:54 they noticed that when organisms made sperm and eggs rather than 647 00:45:54 --> 00:45:58 normal cell division, they noticed that these chromosomes, 648 00:45:58 --> 00:46:03 instead of all of them lining up on the midline, lined up in pairs. 649 00:46:03 --> 00:46:09 And the pairs underwent a series of two divisions. 650 00:46:09 --> 00:46:16 There was a first division which we call meiosis one in which -- 651 00:46:16 --> 00:46:26 -- one copy of each of these Xs went 652 00:46:26 --> 00:46:32 to each daughter cell. Very different than mitosis where 653 00:46:32 --> 00:46:39 the Xs would be split down the middle. Then a second division 654 00:46:39 --> 00:46:47 occurred, meiosis two. And in that each of the daughter 655 00:46:47 --> 00:46:57 cells now the X is divided. 656 00:46:57 --> 00:47:01 And they got that. This one looked, 657 00:47:01 --> 00:47:05 for all the world, like mitosis. But instead, 658 00:47:05 --> 00:47:10 at the end of the day instead of ending up with four chromosomes, 659 00:47:10 --> 00:47:15 here we end up with only two chromosomes in each gamete, 660 00:47:15 --> 00:47:19 sperm or eggs. And what happened was from this pair, 661 00:47:19 --> 00:47:24 one member of the pair was selected. Now, this is either producing sperm 662 00:47:24 --> 00:47:29 or eggs. When a sperm like that came together 663 00:47:29 --> 00:47:35 with an egg like that and fertilization occurred, 664 00:47:35 --> 00:47:41 you get back to four chromosomes. You all know this. You learned 665 00:47:41 --> 00:47:47 this in high school. But the important point about this 666 00:47:47 --> 00:47:53 was that people said, ha, things lining up in pairs, 667 00:47:53 --> 00:47:59 one copy of each going to the offspring, then a copy from mom and 668 00:47:59 --> 00:48:03 a copy from dad restoring the pair. Sounds just like what that dead monk 669 00:48:03 --> 00:48:07 was talking about. [LAUGHTER] It was just the reason 670 00:48:07 --> 00:48:11 people really didn't think much of Mendel's paper was because it was so 671 00:48:11 --> 00:48:15 abstract. What were these genes? He didn't point to anything. There 672 00:48:15 --> 00:48:18 was nothing concrete. And folks hate that. By contrast 673 00:48:18 --> 00:48:22 they now began to see things and vaguely remembered that this was 674 00:48:22 --> 00:48:26 just like what Mendel's story was about. And three different groups 675 00:48:26 --> 00:48:30 around the world began to redo this work on crosses and all that. 676 00:48:30 --> 00:48:35 And wonderfully in 1900 three groups simultaneously published papers 677 00:48:35 --> 00:48:40 about this. Now, Mendel's Law is rediscovered. 678 00:48:40 --> 00:48:46 Now, the explanation here. How does the cytological observations 679 00:48:46 --> 00:48:51 about meiosis explain Mendel's laws of inheritance of traits? 680 00:48:51 --> 00:48:57 Very simply. All you have to imagine is that big R is being 681 00:48:57 --> 00:49:03 carried on one of these chromosomes. Little R on the other one. 682 00:49:03 --> 00:49:09 And then half the offspring had big R, half the offspring had little R. 683 00:49:09 --> 00:49:15 All of Mendel's laws can be implemented by simply assuming that 684 00:49:15 --> 00:49:21 genes and the alleles of those genes live on these chromosomes. 685 00:49:21 --> 00:49:27 So it's beautiful, except for one problem. You may remember from your 686 00:49:27 --> 00:49:33 high schools that Mendel also had another law about more than one 687 00:49:33 --> 00:49:38 trait, pairs of traits. Not just that we have this 688 00:49:38 --> 00:49:42 segregations of alleles away for one trait. What was his law about two 689 00:49:42 --> 00:49:46 traits? We'll go over this next time. What was his law about two 690 00:49:46 --> 00:49:50 traits, like round and wrinkled and green and yellow? 691 00:49:50 --> 00:49:54 That they would be inherited independently of each other. 692 00:49:54 --> 00:49:58 How would that fit into this model? Different chromosomes. They'd be 693 00:49:58 --> 00:50:02 on different chromosomes. But what if I had three traits? 694 00:50:02 --> 00:50:06 Eventually, if I had, now, peas actually have seven pairs of 695 00:50:06 --> 00:50:10 chromosomes. So if I study eight traits in peas, 696 00:50:10 --> 00:50:14 two would have to lie on the same chromosomes. So then the chromosome 697 00:50:14 --> 00:50:19 model would contradict independent inheritance. So either Mendel 698 00:50:19 --> 00:50:23 cannot be right with this other law of independent inheritance that you 699 00:50:23 --> 00:50:27 learned about or the Chromosome Theory cannot be right of these 700 00:50:27 --> 00:50:32 living on these physical molecules and getting distributed that way. 701 00:50:32 --> 00:50:36 Right? So we have a deep problem because either Mendel, 702 00:50:36 --> 00:50:41 my hero, is wrong or this chromosome model is wrong. 703 00:50:41 --> 00:50:45 And the problem is we don't have enough time to resolve this today, 704 00:50:45 --> 00:50:50 so we're going to have to come back on Wednesday and figure 705 00:50:50 --> 50:55 out what happens.