Assignments

ASSIGNMENTS SUPPORTING FILES
Homework 1 (PDF) prob2seqs.fa (FA)
prob3inputseqs.fa (FA)
prob4seq.txt (TXT)
Sample run for problem 6 (TXT)
Homework 2 (PDF) dino1.fa (FA)
dino2.fa (FA)
pombe.fa (FA)
motifs.txt (TXT)
random.fa (FA)
5primesplicesites.txt (TXT)
3primesplicesites.txt (TXT)
splicing.run (TXT)
motif.run (TXT)
Homework 3 (PDF) 1fxd.pdb (PDB)
rmsd.py (PY)
Homework 4 (PDF) hw4.m (M)
repressilator.m (M)

Repressilator model based on: Elowitz M. B., and S. Leibler "A synthetic oscillatory network of transcriptional regulators." Nature 403, no. 6767 (20 Jan 2000): 335-8.