1 00:00:00 --> 00:00:01 2 00:00:01 --> 00:00:02 The following content is provided under a Creative 3 00:00:02 --> 00:00:03 Commons license. 4 00:00:03 --> 00:00:06 Your support will help MIT OpenCourseWare continue to 5 00:00:06 --> 00:00:10 offer high quality educational resources for free. 6 00:00:10 --> 00:00:13 To make a donation or view additional materials from 7 00:00:13 --> 00:00:17 hundreds of MIT courses, visit MIT OpenCourseWare 8 00:00:17 --> 00:00:20 at ocw.mit.edu. 9 00:00:20 --> 00:00:27 PROFESSOR: So, let me start here with the temperature 10 00:00:27 --> 00:00:37 dependence of k. 11 00:00:37 --> 00:00:39 And this turns out to be extremely important. 12 00:00:39 --> 00:00:52 And it's due to Arrhenius in 1889. 13 00:00:52 --> 00:00:56 And Mr. Arrhenius is famous for many reasons. 14 00:00:56 --> 00:00:59 Not just for his rate law. 15 00:00:59 --> 00:01:02 So I learned recently, turns out that he was also one of the 16 00:01:02 --> 00:01:05 first people to calculate the potential effect of carbon 17 00:01:05 --> 00:01:07 dioxide in the atmosphere. 18 00:01:07 --> 00:01:12 And and its potential effect on global warming. 19 00:01:12 --> 00:01:16 This was the Industrial Revolution and people were 20 00:01:16 --> 00:01:20 starting to use fossil fuels at increasing amounts. 21 00:01:20 --> 00:01:25 And back then, already, some people started to get worried. 22 00:01:25 --> 00:01:27 And so he did the calculation. 23 00:01:27 --> 00:01:29 It was a very crude calculation. 24 00:01:29 --> 00:01:34 And he extrapolated, assuming that the rate to fossil fuel 25 00:01:34 --> 00:01:38 use would keep going, he got his calculation 26 00:01:38 --> 00:01:40 pretty much right. 27 00:01:40 --> 00:01:42 What he didn't get right was the amount of fossil fuel 28 00:01:42 --> 00:01:44 that people would be using. 29 00:01:44 --> 00:01:47 And so when he did his calculation, which is again a 30 00:01:47 --> 00:01:50 very crude calculation, he got that we would get in trouble at 31 00:01:50 --> 00:01:54 about 2,000 years from the time of his calculation. 32 00:01:54 --> 00:02:01 So he said, no problem, 2 years, we've got a lot of time. 33 00:02:01 --> 00:02:05 And ever since then people have redone these calculations and 34 00:02:05 --> 00:02:10 more and more sophisticated. 35 00:02:10 --> 00:02:11 But his crude calculation was good enough. 36 00:02:11 --> 00:02:13 And as people redo the calculations, the time that 37 00:02:13 --> 00:02:16 they say we're in trouble to the time of the calculation 38 00:02:16 --> 00:02:17 gets closer and closer together. 39 00:02:17 --> 00:02:19 And the reason for that isn't that their calculations are 40 00:02:19 --> 00:02:22 wrong, it's that the rate at which we put out carbon dioxide 41 00:02:22 --> 00:02:26 just keeps getting faster and faster and faster. 42 00:02:26 --> 00:02:29 So it's interesting to go back to these calculations through 43 00:02:29 --> 00:02:37 the last century and a half and see that. 44 00:02:37 --> 00:02:42 Anyway, so Mr. Arrhenius predicted global warming. 45 00:02:42 --> 00:02:46 And he wrote his rate equation, k is equal to e 46 00:02:46 --> 00:02:51 to the minus Ea over RT. 47 00:02:51 --> 00:02:55 Famous Arrhenius rate equation. 48 00:02:55 --> 00:03:02 If you plot it as log of k is equal to log A minus Ea over 49 00:03:02 --> 00:03:06 RT, you find that it looks like a straight line. 50 00:03:06 --> 00:03:11 With an intercept at log A, where A is the pre-factor 51 00:03:11 --> 00:03:16 here and Ea is going to be the activation energy. 52 00:03:16 --> 00:03:21 And the slope is Ea, minus Ea over RT. 53 00:03:21 --> 00:03:23 R is the gas constant. 54 00:03:23 --> 00:03:26 T is the temperature. 55 00:03:26 --> 00:03:29 And if you put in some typical numbers, activation energies 56 00:03:29 --> 00:03:35 typically are on the order of a few tens to hundreds of 57 00:03:35 --> 00:03:36 kilojoules per mole. 58 00:03:36 --> 00:03:44 Let's say 50 to 300 kilojoules per mole. 59 00:03:44 --> 00:03:49 And typical activation factors, typical pre-exponential 60 00:03:49 --> 00:03:54 factors, are depending if it's a first order or second order. 61 00:03:54 --> 00:03:57 Let's say, first order 10 to the 12th, 10 to the 15th, per 62 00:03:57 --> 00:04:03 second, so the A carries the units for the rate here. 63 00:04:03 --> 00:04:08 So if you have A, so this is for first order, if you have a 64 00:04:08 --> 00:04:11 second order, then the units of A will be different. 65 00:04:11 --> 00:04:12 And typically they're going to be on the order of 10 to the 66 00:04:12 --> 00:04:16 11th or so, 10 to the 10th, 10 to the 12th, one over molar 67 00:04:16 --> 00:04:23 per second, for second order. 68 00:04:23 --> 00:04:30 And it's interesting to do sort of a back of the envelope 69 00:04:30 --> 00:04:42 example to figure out how important this rate is. 70 00:04:42 --> 00:04:48 And one of the interesting things to look at is, suppose 71 00:04:48 --> 00:04:52 that I'm at some temperature and I want to know how do 72 00:04:52 --> 00:04:54 I change the temperature. 73 00:04:54 --> 00:04:56 How much do I need to change the temperature 74 00:04:56 --> 00:04:58 to double the rate. 75 00:04:58 --> 00:05:01 And let's say my temperature's at, say, T1 is on the order of 76 00:05:01 --> 00:05:06 300 degrees Kelvin, room temperature. 77 00:05:06 --> 00:05:10 Room temperature, and let's take a typical Ea on the order 78 00:05:10 --> 00:05:15 of 100 kilojoules per mole. 79 00:05:15 --> 00:05:17 Room temperature, or body temperature are roughly 80 00:05:17 --> 00:05:19 the same, right? 81 00:05:19 --> 00:05:23 These things are. 82 00:05:23 --> 00:05:28 And so the question is, what does T2 need to be to double 83 00:05:28 --> 00:05:31 the rate connected with an activation energy which is 84 00:05:31 --> 00:05:33 fairly typical of 100 kilojoules per mole. 85 00:05:33 --> 00:05:37 So we want to know, what is, if I have k2 over k1 is equal 86 00:05:37 --> 00:05:40 to two, what's the new T2. 87 00:05:40 --> 00:05:46 Alright so A e to the minus Ea over R T2 divided by A e to the 88 00:05:46 --> 00:05:51 minus Ea over R T1, we want that equal to two, 89 00:05:51 --> 00:05:55 the A's cancel out. 90 00:05:55 --> 00:06:02 So log k2 over k1, which is equal to log two, is equal 91 00:06:02 --> 00:06:07 to Ea over R, one over T1 minus one over T2. 92 00:06:07 --> 00:06:12 We know what this is, we know what this is, we solve for T2 93 00:06:12 --> 00:06:19 and we find that T2 is 305 degrees kelvin. 94 00:06:19 --> 00:06:25 It's a pretty small change to double the rate. 95 00:06:25 --> 00:06:27 So it's pretty important that your body temperature 96 00:06:27 --> 00:06:30 doesn't change very much. 97 00:06:30 --> 00:06:35 If you have a fever and your temperature goes up, 98 00:06:35 --> 00:06:36 rates start going up. 99 00:06:36 --> 00:06:42 In your body, you could cause a lot of problems if the rates of 100 00:06:42 --> 00:06:50 some reactions go up by a factor of two. 101 00:06:50 --> 00:06:52 So, very sensitive to temperature. 102 00:06:52 --> 00:06:57 Rates are very sensitive to temperature. 103 00:06:57 --> 00:07:00 What are these things physically? 104 00:07:00 --> 00:07:03 Ea and and the pre-exponent factor. 105 00:07:03 --> 00:07:04 Let's take a look at that. 106 00:07:04 --> 00:07:09 So physically what's going on is, you have your two, let's 107 00:07:09 --> 00:07:17 say it's a bimolecular reaction, A plus B goes to C. 108 00:07:17 --> 00:07:20 So mechanistically what we think is happening is that 109 00:07:20 --> 00:07:22 the molecules come together and collide, right? 110 00:07:22 --> 00:07:29 You have A and B getting together and colliding. 111 00:07:29 --> 00:07:33 And the hypothesis is that when they collide 112 00:07:33 --> 00:07:34 they form a complex. 113 00:07:34 --> 00:07:37 They sort of bind together momentarily. 114 00:07:37 --> 00:07:41 And form this complex that has all the kinetic energy, or part 115 00:07:41 --> 00:07:44 of the kinetic energy of this collision as part of it. 116 00:07:44 --> 00:07:50 So A and B are bound together in some highly excited complex. 117 00:07:50 --> 00:07:55 Which then falls apart to give the product by rearranging 118 00:07:55 --> 00:08:00 its atoms around. 119 00:08:00 --> 00:08:13 And if you plot the energy of this process as a function of 120 00:08:13 --> 00:08:28 the reaction, we call this the reaction coordinate, then 121 00:08:28 --> 00:08:34 we're going to start at some delta G, or some energy. 122 00:08:34 --> 00:08:40 For the reactants. 123 00:08:40 --> 00:08:42 We're going to end up with some energy for the products. 124 00:08:42 --> 00:08:44 And it could be higher or lower. 125 00:08:44 --> 00:08:46 Let me make them higher here, just because I don't have 126 00:08:46 --> 00:08:47 enough room on the board. 127 00:08:47 --> 00:08:51 Products. 128 00:08:51 --> 00:08:56 So if this is an endothermic reaction, that's the energy for 129 00:08:56 --> 00:08:59 C, this is the energy for A plus B, and then along the way 130 00:08:59 --> 00:09:04 we have this complex that captures some of the 131 00:09:04 --> 00:09:06 energy of the collision. 132 00:09:06 --> 00:09:10 Up here somewhere. 133 00:09:10 --> 00:09:17 And this is the energy, then, at A B star, which we call 134 00:09:17 --> 00:09:25 the activated complex. 135 00:09:25 --> 00:09:28 So for the reaction to happen, then, we have to go over the 136 00:09:28 --> 00:09:31 barrier and then back to the product. 137 00:09:31 --> 00:09:38 And this distance from the energy of the reactants to the 138 00:09:38 --> 00:09:41 top of the barrier, that's Ea. 139 00:09:41 --> 00:09:42 That's the energy of activation. 140 00:09:42 --> 00:09:45 How much extra energy you have to put in there to 141 00:09:45 --> 00:09:47 go over the barrier. 142 00:09:47 --> 00:09:49 So it's very clear that as you increase the temperature and 143 00:09:49 --> 00:09:53 you increase the amount of energy that the reactants 144 00:09:53 --> 00:09:58 thermally have, or in terms of their kinetic energy, as you 145 00:09:58 --> 00:10:00 raise the temperature you get more and more kinetic energy, 146 00:10:00 --> 00:10:02 you're going up higher and higher in the Boltzmann 147 00:10:02 --> 00:10:03 distribution. 148 00:10:03 --> 00:10:07 And the number of reactants that can make it over the 149 00:10:07 --> 00:10:10 barrier clearly goes up exponentially. 150 00:10:10 --> 00:10:14 As the temperature goes up. 151 00:10:14 --> 00:10:17 So this is Ea for the forward reaction. 152 00:10:17 --> 00:10:22 Clearly there's going to be an equivalent activation energy 153 00:10:22 --> 00:10:23 for the backward reaction. 154 00:10:23 --> 00:10:26 The two are related. 155 00:10:26 --> 00:10:30 The difference between the forward and backward reactions, 156 00:10:30 --> 00:10:33 so E backwards minus Ea forward gives you the delta G for 157 00:10:33 --> 00:10:37 the reaction itself. 158 00:10:37 --> 00:10:44 So, Ea backwards minus Ea forwards gives you delta 159 00:10:44 --> 00:10:49 E for the reaction. 160 00:10:49 --> 00:10:55 Where E could be enthalpy or it could be free energy. 161 00:10:55 --> 00:10:58 So that's the physical origin of this Ea, this 162 00:10:58 --> 00:11:00 activation energy. 163 00:11:00 --> 00:11:05 Now, A, the pre-exponential factor, that's the rate of 164 00:11:05 --> 00:11:11 attempt for the molecules to try to go over the barrier. 165 00:11:11 --> 00:11:27 So it has units that make sense for that. 166 00:11:27 --> 00:11:29 And this A is different than this molecule here. 167 00:11:29 --> 00:11:33 Rate of attempt. 168 00:11:33 --> 00:11:37 How many times per unit time, or how many times per second, 169 00:11:37 --> 00:11:40 do these two molecules try to collide? 170 00:11:40 --> 00:11:43 They never collide, they never try, they'll 171 00:11:43 --> 00:11:47 never make it over. 172 00:11:47 --> 00:11:58 So it's one over second, or one over mole second. 173 00:11:58 --> 00:12:01 So this is the rate of attempt. 174 00:12:01 --> 00:12:14 Then e to the minus Ea over RT is the probability of success, 175 00:12:14 --> 00:12:18 of making it over the barrier. 176 00:12:18 --> 00:12:21 So the rate of attempt times the probability of success 177 00:12:21 --> 00:12:24 gives you the rate per unit time of making it 178 00:12:24 --> 00:12:31 over the barrier. 179 00:12:31 --> 00:12:40 Any questions on the dissection of this Arrhenius rate law? 180 00:12:40 --> 00:12:43 Alright, so here's some examples, a few examples 181 00:12:43 --> 00:12:46 that you know of. 182 00:12:46 --> 00:12:57 Let's look at OH minus plus methyl bromide. 183 00:12:57 --> 00:13:00 Displacement reaction going to this OH minus attacks 184 00:13:00 --> 00:13:03 the carbon right here. 185 00:13:03 --> 00:13:11 To form an activated complex H, H, H, with the OH 186 00:13:11 --> 00:13:12 coming in like this. 187 00:13:12 --> 00:13:16 Let me go like this. 188 00:13:16 --> 00:13:19 OK, there's the intermediate right here. 189 00:13:19 --> 00:13:23 The activated complex in your reaction. 190 00:13:23 --> 00:13:25 Which then falls apart. 191 00:13:25 --> 00:13:26 It can fall apart two ways. 192 00:13:26 --> 00:13:30 The OH can be spit out again, forming back to the reactants, 193 00:13:30 --> 00:13:34 or the bromine can be spit out, forming the product. 194 00:13:34 --> 00:13:41 Which in this case here is methanol. 195 00:13:41 --> 00:13:48 H, H, H, OH, plus Br minus. 196 00:13:48 --> 00:13:51 Typical example. 197 00:13:51 --> 00:13:56 So, given this picture here, which you're probably already 198 00:13:56 --> 00:14:02 somewhat familiar with, we can then move on to talk about 199 00:14:02 --> 00:14:04 how to affect this barrier. 200 00:14:04 --> 00:14:07 How to change the rate. 201 00:14:07 --> 00:14:08 Oh, I should say a couple more things. 202 00:14:08 --> 00:14:10 One more thing, too. 203 00:14:10 --> 00:14:15 Now, the rate of, so clearly the Ea's are related. 204 00:14:15 --> 00:14:18 Because the difference of the two Ea's is the delta 205 00:14:18 --> 00:14:21 E for the reaction. 206 00:14:21 --> 00:14:25 But the pre-exponential factors, these A's, for the 207 00:14:25 --> 00:14:27 forward reaction and the backward reactions aren't 208 00:14:27 --> 00:14:29 necessarily related. 209 00:14:29 --> 00:14:31 You can imagine that in one case you have, first of all 210 00:14:31 --> 00:14:34 they don't even have to have the same units. 211 00:14:34 --> 00:14:37 You could have a bimolecular reaction one way. 212 00:14:37 --> 00:14:42 And a unimolecular reaction the other way. 213 00:14:42 --> 00:14:45 So you can't really say anything about the forward 214 00:14:45 --> 00:14:49 versus the backward rate this way. 215 00:14:49 --> 00:14:54 All you know is about the energies. 216 00:14:54 --> 00:15:01 OK, catalysis. 217 00:15:01 --> 00:15:05 So now we have this barrier we have to overcome. 218 00:15:05 --> 00:15:14 And, so suppose that you have two motivators. 219 00:15:14 --> 00:15:17 Suppose you have an equilibrium case which is slow. 220 00:15:17 --> 00:15:19 And a reaction which is slow in both directions, 221 00:15:19 --> 00:15:23 k1, k minus one. 222 00:15:23 --> 00:15:25 And you don't want to wait for this to happen. 223 00:15:25 --> 00:15:28 And this could be in a biological environment. 224 00:15:28 --> 00:15:30 Or it could be an industrial process, like the 225 00:15:30 --> 00:15:33 Haber process. 226 00:15:33 --> 00:15:34 You don't want to wait. 227 00:15:34 --> 00:15:36 And so one of the ways that you can speed it up, you know is 228 00:15:36 --> 00:15:38 by changing the temperature. 229 00:15:38 --> 00:15:41 You change the temperature, the rate goes up. 230 00:15:41 --> 00:15:43 You change it by five degrees, the rate goes 231 00:15:43 --> 00:15:44 up by a factor of two. 232 00:15:44 --> 00:15:47 You can make a huge change by changing the temperature. 233 00:15:47 --> 00:15:56 But, so if you raise T, speeds up. 234 00:15:56 --> 00:16:02 But, K equilibrium also changes. 235 00:16:02 --> 00:16:04 And we saw that when we did the Haber process. 236 00:16:04 --> 00:16:08 We raised the temperature. 237 00:16:08 --> 00:16:11 The rate speeds up, but the equilibrium switches 238 00:16:11 --> 00:16:12 to the reactants. 239 00:16:12 --> 00:16:15 That's no good. 240 00:16:15 --> 00:16:18 So changing the temperature is not always the best thing to do 241 00:16:18 --> 00:16:21 if you want to change the rate. 242 00:16:21 --> 00:16:30 Instead, what you can do is use a catalyst. if you find one. 243 00:16:30 --> 00:16:38 A molecule that reacts with your reactant to form a 244 00:16:38 --> 00:16:42 product, that's B, spitting back that molecule C again 245 00:16:42 --> 00:16:45 without using it up. 246 00:16:45 --> 00:16:49 And now with the activation energy, we can understand 247 00:16:49 --> 00:16:50 what the catalyst does. 248 00:16:50 --> 00:16:55 What the catalyst does is speeds up those rates, k2 and 249 00:16:55 --> 00:17:02 k minus one, by changing the activation energy. 250 00:17:02 --> 00:17:04 By making the E smaller. 251 00:17:04 --> 00:17:10 So now I have a catalyst, and I can make this energy smaller. 252 00:17:10 --> 00:17:21 So this would be A plus A C activated, getting 253 00:17:21 --> 00:17:27 ready to spit out B. 254 00:17:27 --> 00:17:33 So in my example here where I have A plus B goes to products, 255 00:17:33 --> 00:17:37 so I would have A, some combination of A, B, and C 256 00:17:37 --> 00:17:42 together, to give out the products. 257 00:17:42 --> 00:17:45 In this case, the difference in energies doesn't change. 258 00:17:45 --> 00:17:51 All that you're changing is that the hump, in both ways. 259 00:17:51 --> 00:17:53 Equilibrium constant doesn't change. 260 00:17:53 --> 00:17:58 Just the rate changes through the Arrhenius rate law. 261 00:17:58 --> 00:18:00 And this is extremely powerful. 262 00:18:00 --> 00:18:04 Especially in biology. 263 00:18:04 --> 00:18:10 So let me give you some examples here. 264 00:18:10 --> 00:18:16 This is sort of a typical example of increasing rates. 265 00:18:16 --> 00:18:18 Let's say you have the reaction, hydrogen peroxide, 266 00:18:18 --> 00:18:28 goes to water plus oxygen. 267 00:18:28 --> 00:18:31 If you take a little bit of hydrogen peroxide and you 268 00:18:31 --> 00:18:33 put it on your skin, it starts to bubble. 269 00:18:33 --> 00:18:37 But if you let it sit on the bottle nothing happens to it. 270 00:18:37 --> 00:18:40 Put it on your hair, your hair turns white. 271 00:18:40 --> 00:18:43 Blond. 272 00:18:43 --> 00:18:45 But again, if you just let it sit in the bottle 273 00:18:45 --> 00:18:47 very little happens. 274 00:18:47 --> 00:18:51 Well, it happens but very, very slowly over time. 275 00:18:51 --> 00:18:56 So if you look at the rate of this reaction here, if the 276 00:18:56 --> 00:19:06 rate, moles per second, with no catalyst at all, the rate is 277 00:19:06 --> 00:19:10 10 to the minus 8 molar per second. 278 00:19:10 --> 00:19:12 Which is very slow. 279 00:19:12 --> 00:19:21 And the activation energy in kilojoules per mole, 280 00:19:21 --> 00:19:25 in this case here is 71 kilojoules per mole. 281 00:19:25 --> 00:19:27 Now we can start adding catalysts. 282 00:19:27 --> 00:19:29 We can start adding inorganic catalysts 283 00:19:29 --> 00:19:31 like hydrogen bromide. 284 00:19:31 --> 00:19:35 Increase the rate at 10 to the minus 4. 285 00:19:35 --> 00:19:40 So this creates a complex with the hydrogen peroxide, which 286 00:19:40 --> 00:19:45 lowers the barrier to 50 kilojoules per mole, a 287 00:19:45 --> 00:19:46 small amount of lowering. 288 00:19:46 --> 00:19:51 But because the energy is in the exponent there, it makes 289 00:19:51 --> 00:19:52 a big change in the rate. 290 00:19:52 --> 00:19:53 Yes. 291 00:19:53 --> 00:20:01 STUDENT: [INAUDIBLE] 292 00:20:01 --> 00:20:02 PROFESSOR: The rate is independent of the 293 00:20:02 --> 00:20:04 catalyst concentration. 294 00:20:04 --> 00:20:05 STUDENT: [INAUDIBLE] 295 00:20:05 --> 00:20:09 PROFESSOR: The rate would have to change. 296 00:20:09 --> 00:20:19 You're right. 297 00:20:19 --> 00:20:24 That's a good question and I'm not prepared to answer it. 298 00:20:24 --> 00:20:27 I'm going to have to think about this. 299 00:20:27 --> 00:20:31 Let's pretend now that we are at per unit concentration 300 00:20:31 --> 00:20:33 of the catalyst. 301 00:20:33 --> 00:20:37 And then, and I'll look into it. 302 00:20:37 --> 00:20:40 OK, so this is what happens with an inorganic catalyst. 303 00:20:40 --> 00:20:46 And instead if you use a generic biological catalyst, an 304 00:20:46 --> 00:20:50 enzyme catalase, it's a sort ubiquitous enzyme which is why 305 00:20:50 --> 00:20:54 you have it on your skin, et cetera, then this rate 306 00:20:54 --> 00:20:57 become 10 to the 7th. 307 00:20:57 --> 00:21:08 And the activation energy drops to eight kilojoules per mole. 308 00:21:08 --> 00:21:11 So your question really has to do with the units of A. 309 00:21:11 --> 00:21:17 Of the pre-factor right there. 310 00:21:17 --> 00:21:21 OK, and so there are all these examples of reactions. 311 00:21:21 --> 00:21:24 That are very important biologically. 312 00:21:24 --> 00:21:28 Where with an inorganic catalyst, an organic catalyst, 313 00:21:28 --> 00:21:31 you can change the rate by maybe a few orders 314 00:21:31 --> 00:21:32 of magnitude. 315 00:21:32 --> 00:21:35 But as soon as you put in an enzyme, the rate changes by 316 00:21:35 --> 00:21:37 ten orders of magnitude. 317 00:21:37 --> 00:21:40 Or in this case eight plus seven, fifteen 318 00:21:40 --> 00:21:42 orders of magnitude. 319 00:21:42 --> 00:21:46 Humongous change in the rate. 320 00:21:46 --> 00:21:50 So you've probably done some enzyme catalysis before. 321 00:21:50 --> 00:22:04 But it's probably a good idea to quickly do it again. 322 00:22:04 --> 00:22:07 Because it's just so important. 323 00:22:07 --> 00:22:10 And it ties together our approximations that 324 00:22:10 --> 00:22:15 we've learned about. 325 00:22:15 --> 00:22:20 So enzyme catalysis, so enzymes can be either, could be 326 00:22:20 --> 00:22:22 heterogeneous catalysis, can be homogeneous catalysis. 327 00:22:22 --> 00:22:25 Enzymes are ubiquitous in the biological environment. 328 00:22:25 --> 00:22:31 They serve to regulate the cellular activity in 329 00:22:31 --> 00:22:35 very complicated ways. 330 00:22:35 --> 00:22:40 The cell will up-regulate or down-regulate the concentration 331 00:22:40 --> 00:22:45 of enzymes as it needs to make more or less products. 332 00:22:45 --> 00:22:52 And there's whole cascades of events that happen in this way. 333 00:22:52 --> 00:22:57 And they're in very small concentrations. 334 00:22:57 --> 00:22:59 But they play an extremely important role. 335 00:22:59 --> 00:23:01 Because they're also extremely specific. 336 00:23:01 --> 00:23:06 So you can have an enzyme that will only act on one part 337 00:23:06 --> 00:23:09 of the biological cycle. 338 00:23:09 --> 00:23:11 And affect it by 10 orders of magnitude or 15 339 00:23:11 --> 00:23:12 orders of magnitude. 340 00:23:12 --> 00:23:16 But not affect any other protein that's around. 341 00:23:16 --> 00:23:20 And that's amazing. 342 00:23:20 --> 00:23:29 And it turns out that a lot of the diseases of old age like, 343 00:23:29 --> 00:23:34 what I'm about to face, or am facing already, you, not yet, 344 00:23:34 --> 00:23:44 but, are the result of some of these enzyme up-regulation, 345 00:23:44 --> 00:23:46 down-regulation, beginning to break down. 346 00:23:46 --> 00:23:52 So we have all these reactions going on that need to 347 00:23:52 --> 00:23:53 be essentially perfect. 348 00:23:53 --> 00:23:58 When you have DNA replication or protein folding, 349 00:23:58 --> 00:24:01 or things like this. 350 00:24:01 --> 00:24:02 And errors are made. 351 00:24:02 --> 00:24:06 Errors are made all the time in these processes. 352 00:24:06 --> 00:24:09 And errors cause diseases. 353 00:24:09 --> 00:24:15 And so, even as a baby, your biological 354 00:24:15 --> 00:24:17 processes make errors. 355 00:24:17 --> 00:24:20 But you have these processes, these enzymes especially based 356 00:24:20 --> 00:24:25 on enzymes, that can go in there and sort of fix things. 357 00:24:25 --> 00:24:29 Fix things and make sure that you don't end up getting 358 00:24:29 --> 00:24:33 Alzheimer's at age six months. 359 00:24:33 --> 00:24:40 But as we get older, for some reason, these repair processes 360 00:24:40 --> 00:24:41 lose their bearings. 361 00:24:41 --> 00:24:43 Just like we lose our bearings. 362 00:24:43 --> 00:24:48 And and they can't repair things any more. 363 00:24:48 --> 00:24:50 They don't do it very well. 364 00:24:50 --> 00:24:54 And that causes all sorts of diseases. 365 00:24:54 --> 00:24:57 Cancer is probably one of the diseases, due to the lack of 366 00:24:57 --> 00:24:59 being able to repair problems. 367 00:24:59 --> 00:25:00 Alzheimer's. 368 00:25:00 --> 00:25:02 All sorts of dementias. 369 00:25:02 --> 00:25:07 MS. Just name a chronic disease and it's probably due to a 370 00:25:07 --> 00:25:10 problem with up-regulation or down-regulation of some 371 00:25:10 --> 00:25:17 proteins, some enzymes, that are due to a repair process. 372 00:25:17 --> 00:25:25 So anyway, these enzymes are big proteins. 373 00:25:25 --> 00:25:29 10 to the 4th, 10 to the 6th molecular weight proteins. 374 00:25:29 --> 00:25:30 On that order or so. 375 00:25:30 --> 00:25:35 They tend to be fairly large in size. 376 00:25:35 --> 00:25:36 On the order of nanometers. 377 00:25:36 --> 00:25:39 Let's say ten nanometers to 100 nanometers. 378 00:25:39 --> 00:25:41 That could be, that's a little bit on the big side. 379 00:25:41 --> 00:25:44 Probably closer to ten nanometers. 380 00:25:44 --> 00:25:46 Ten nanometers is kind of big, for any sort of 381 00:25:46 --> 00:25:51 biological molecule. 382 00:25:51 --> 00:25:54 And they always end with their name ase. 383 00:25:54 --> 00:26:00 Like catalase, uriase, rnase. 384 00:26:00 --> 00:26:04 Esterase, clips ester bonds. 385 00:26:04 --> 00:26:06 Your liver is full of esterases. 386 00:26:06 --> 00:26:09 Because it likes to break things down into smaller and 387 00:26:09 --> 00:26:12 smaller pieces and lots of ester bonds and things that 388 00:26:12 --> 00:26:14 are not very biologically interesting. 389 00:26:14 --> 00:26:22 And that's one way of the liver breaking things down. 390 00:26:22 --> 00:26:29 So the way it works is that you have your reactants, which in 391 00:26:29 --> 00:26:39 the biological language are called your substrate, 392 00:26:39 --> 00:26:44 come in, into an enzyme. 393 00:26:44 --> 00:26:50 Gets bound up in a pocket of, there's the 394 00:26:50 --> 00:26:52 substrate, reactant. 395 00:26:52 --> 00:26:55 There's the enzyme here. 396 00:26:55 --> 00:26:58 Forms a complex. 397 00:26:58 --> 00:27:06 And then product gets spit out. 398 00:27:06 --> 00:27:08 And the product floats off. 399 00:27:08 --> 00:27:09 And does its thing. 400 00:27:09 --> 00:27:12 It probably gets bound to another enzyme, which 401 00:27:12 --> 00:27:13 makes another product. 402 00:27:13 --> 00:27:15 Et cetera, and the cascade goes on. 403 00:27:15 --> 00:27:18 The signaling cascade goes on. 404 00:27:18 --> 00:27:22 And this enzyme is in very small concentration. 405 00:27:22 --> 00:27:25 The product goes away, so that's going to stay as a very 406 00:27:25 --> 00:27:32 small concentration as well. 407 00:27:32 --> 00:27:44 So let's observe experimentally, then. 408 00:27:44 --> 00:27:50 Experimentally, what's seen is that the substrate 409 00:27:50 --> 00:27:55 makes products in the presence of the enzyme. 410 00:27:55 --> 00:28:03 With a rate dP/dt, that's, at t equals zero this is the initial 411 00:28:03 --> 00:28:06 rate is proportional to the concentration of the enzyme. 412 00:28:06 --> 00:28:10 This is initial rate. 413 00:28:10 --> 00:28:14 And in the language of enzymatic kinetics, this is 414 00:28:14 --> 00:28:20 called the velocity. dP/dt is also called the velocity. 415 00:28:20 --> 00:28:23 Velocity, moles per unit time. 416 00:28:23 --> 00:28:27 And this would be called, then, the initial velocity of v 417 00:28:27 --> 00:28:29 initial. v initial's proportional to the 418 00:28:29 --> 00:28:33 enzyme concentration. 419 00:28:33 --> 00:28:37 And what else is seen? 420 00:28:37 --> 00:28:42 For fixed, if I fix my concentration of enzyme, I look 421 00:28:42 --> 00:28:46 at the velocity over time, let's say minus dS/dt, which is 422 00:28:46 --> 00:28:57 dP/dt, I find that that's proportional to S. 423 00:28:57 --> 00:29:00 For small S. 424 00:29:00 --> 00:29:03 Small concentration of substrate. 425 00:29:03 --> 00:29:13 And then at large concentration, it's a constant. 426 00:29:13 --> 00:29:22 So it's not a straight line. 427 00:29:22 --> 00:29:28 In fact, I don't want to do it on this board here. 428 00:29:28 --> 00:29:41 I'll do it on this board here. 429 00:29:41 --> 00:29:44 Plot the concentration of substrate on this axis, and 430 00:29:44 --> 00:29:48 I plot the velocity, or the rate, of the reaction 431 00:29:48 --> 00:29:49 on that axis here. 432 00:29:49 --> 00:29:53 What I find is that it's a constant. 433 00:29:53 --> 00:29:55 So it's going to saturate, the rate is going to 434 00:29:55 --> 00:29:59 saturate to some number. 435 00:29:59 --> 00:30:03 And it's going to start linear with substrate 436 00:30:03 --> 00:30:04 at the beginning. 437 00:30:04 --> 00:30:07 So it's going to be a straight line at the beginning. 438 00:30:07 --> 00:30:09 And eventually it will saturate. 439 00:30:09 --> 00:30:09 That sort of slope. 440 00:30:09 --> 00:30:14 And the saturation point, that's the maximum velocity, or 441 00:30:14 --> 00:30:16 maximum rate that it can have. 442 00:30:16 --> 00:30:20 So we call this v max. 443 00:30:20 --> 00:30:34 And this part here, the velocity is proportional to S. 444 00:30:34 --> 00:30:39 And somehow we have to find, explain this. 445 00:30:39 --> 00:30:43 Using what we know from kinetics. 446 00:30:43 --> 00:30:45 So we have to come up with a mechanism, and then 447 00:30:45 --> 00:30:48 solve the mechanism. 448 00:30:48 --> 00:30:53 And make sure that it reproduces the data. 449 00:30:53 --> 00:30:54 So we're not the first ones to do this, obviously. 450 00:30:54 --> 00:31:02 Michaelis and Menton did this many years ago. 451 00:31:02 --> 00:31:04 For this mechanism. 452 00:31:04 --> 00:31:08 And the idea is, you have the enzyme plus a substrate 453 00:31:08 --> 00:31:15 react, k1, k minus one, to form a complex. 454 00:31:15 --> 00:31:16 Enzyme substrate complex. 455 00:31:16 --> 00:31:20 But unlike what we've drawn before in terms of this hump, 456 00:31:20 --> 00:31:23 where there's an activated complex which is not stable, in 457 00:31:23 --> 00:31:28 this case here this enzyme substrate combination lasts a 458 00:31:28 --> 00:31:36 long enough time that it's basically a stable complex. 459 00:31:36 --> 00:31:41 So we're going to write this as a real intermediate that 460 00:31:41 --> 00:31:44 lasts long enough for you to be able to fish it out. 461 00:31:44 --> 00:31:47 And characterize it. 462 00:31:47 --> 00:31:51 And then eventually, that, k2, k minus two, goes 463 00:31:51 --> 00:31:54 to product plus enzyme. 464 00:31:54 --> 00:31:58 So the enzyme is a catalyst that forms a 465 00:31:58 --> 00:31:59 long-lived complex. 466 00:31:59 --> 00:32:04 And if you were to draw this, then, in our energy diagram, 467 00:32:04 --> 00:32:10 where we have the reaction coordinate here, you start out 468 00:32:10 --> 00:32:16 with your enzyme plus substrate. 469 00:32:16 --> 00:32:23 Go up, and you form your intermediate up here. 470 00:32:23 --> 00:32:23 ES. 471 00:32:23 --> 00:32:26 And I put a little dimple in there, because it's stable 472 00:32:26 --> 00:32:29 enough that it's not on the top of the hump, but 473 00:32:29 --> 00:32:32 it lives long enough. 474 00:32:32 --> 00:32:38 And it comes back down to form the product. 475 00:32:38 --> 00:32:39 Plus the enzyme. 476 00:32:39 --> 00:32:42 Without the enzyme in there, this hump would 477 00:32:42 --> 00:32:44 be way, way up there. 478 00:32:44 --> 00:32:47 Would be maybe a factor of ten higher. 479 00:32:47 --> 00:32:51 So this really lowers it a lot. 480 00:32:51 --> 00:32:54 Now we can start to solve this mechanism. 481 00:32:54 --> 00:32:56 And I forgot one arrow. 482 00:32:56 --> 00:33:00 There which is the arrow going back. 483 00:33:00 --> 00:33:01 Which you usually don't see, but we might as 484 00:33:01 --> 00:33:03 well keep it there. 485 00:33:03 --> 00:33:15 For the sake of completeness. 486 00:33:15 --> 00:33:16 So what do we know? 487 00:33:16 --> 00:33:22 We know that this intermediate concentration is very small. 488 00:33:22 --> 00:33:24 The enzyme concentration itself is very small. 489 00:33:24 --> 00:33:26 Intermediate is very small. 490 00:33:26 --> 00:33:29 And it doesn't change very much. 491 00:33:29 --> 00:33:36 Not changing much. 492 00:33:36 --> 00:33:38 So that means that we need to use a steady 493 00:33:38 --> 00:33:39 state approximation. 494 00:33:39 --> 00:33:46 So let's write down the rate for this intermediate, 495 00:33:46 --> 00:33:49 d[ES]/dt. 496 00:33:49 --> 00:33:53 It gets formed through the forward process. 497 00:33:53 --> 00:33:57 I'm going to put my brackets back in because E and ES would 498 00:33:57 --> 00:33:59 look the same otherwise. 499 00:33:59 --> 00:34:02 Gets destroyed. 500 00:34:02 --> 00:34:03 Through the backward ways. 501 00:34:03 --> 00:34:05 And I'm going to use a steady state approximation. 502 00:34:05 --> 00:34:07 So I'm already going to start adding steady state here every 503 00:34:07 --> 00:34:09 time I see an intermediate. 504 00:34:09 --> 00:34:15 Get it destroyed to make products. 505 00:34:15 --> 00:34:17 It gets recreated through the backwards reaction 506 00:34:17 --> 00:34:24 from the products. 507 00:34:24 --> 00:34:25 And I'm going to set that equal to zero for the 508 00:34:25 --> 00:34:28 steady state approximation. 509 00:34:28 --> 00:34:33 Now, we don't really want to have this E 510 00:34:33 --> 00:34:34 floating around here. 511 00:34:34 --> 00:34:37 Because this is something that is very hard to measure. 512 00:34:37 --> 00:34:40 It's much easier to measure the initial concentration 513 00:34:40 --> 00:34:41 of the enzyme. 514 00:34:41 --> 00:34:44 What you put in there, instead of the amount 515 00:34:44 --> 00:34:46 that's not being bound up. 516 00:34:46 --> 00:34:51 So we're going to solve, instead, in terms of [E] 517 00:34:51 --> 00:34:55 is equal to [E]0 minus [ES], where this is the initial 518 00:34:55 --> 00:34:58 concentration and this is the amount that's 519 00:34:58 --> 00:34:59 binding substrate. 520 00:34:59 --> 00:35:03 And this is the amount of free enzyme here then. 521 00:35:03 --> 00:35:08 And when you do that, and you plug in here, and you plug in 522 00:35:08 --> 00:35:14 here, you get your result. 523 00:35:14 --> 00:35:20 Which is that [E] 524 00:35:20 --> 00:35:22 steady state, [ES] 525 00:35:22 --> 00:35:37 steady state, is this ratio. k1 times [S] 526 00:35:37 --> 00:35:45 plus k minus two times the product divided by k minus one 527 00:35:45 --> 00:35:51 plus k2 plus k1 times [S] 528 00:35:51 --> 00:35:57 plus k minus two times the product, times proportional 529 00:35:57 --> 00:36:05 to the initial concentration of enzyme. 530 00:36:05 --> 00:36:10 And then you can take your steady state approximation for 531 00:36:10 --> 00:36:30 the intermediate and plug it back into your rate equation. 532 00:36:30 --> 00:36:35 So the velocity, we defined as the rate which is minus 533 00:36:35 --> 00:36:45 d[S]/dt, which is k1 times [E] 534 00:36:45 --> 00:36:48 times [S], this is the destruction of the substrate 535 00:36:48 --> 00:36:52 minus k minus one, times [ES] 536 00:36:52 --> 00:36:57 steady state, the backwards process. 537 00:36:57 --> 00:36:59 So we put in, instead of this [E] 538 00:36:59 --> 00:37:00 we put in [E] 539 00:37:00 --> 00:37:06 is equal to [E]0 minus [ES] 540 00:37:06 --> 00:37:10 steady state. 541 00:37:10 --> 00:37:12 And then we put in for [ES] 542 00:37:12 --> 00:37:15 steady state, we put in what we found here. 543 00:37:15 --> 00:37:19 We turn the crank on the algebra. 544 00:37:19 --> 00:37:27 And we find that the velocity, then, is k1 k2 times the 545 00:37:27 --> 00:37:29 substrate concentration. 546 00:37:29 --> 00:37:34 Minus k minus one times k minus two times the 547 00:37:34 --> 00:37:36 product concentration. 548 00:37:36 --> 00:37:44 The whole thing times the initial enzyme concentration. 549 00:37:44 --> 00:37:48 And then k minus one plus k2 on the bottom. 550 00:37:48 --> 00:37:51 Plus k1 [S] 551 00:37:51 --> 00:37:57 plus k minus two times the product. 552 00:37:57 --> 00:38:07 So, as I mentioned, this product here usually 553 00:38:07 --> 00:38:08 just floats away. 554 00:38:08 --> 00:38:13 And so locally, where you're doing the, and then it 555 00:38:13 --> 00:38:17 gets used by the next step in the cycle. 556 00:38:17 --> 00:38:20 So this is pretty much zero. 557 00:38:20 --> 00:38:22 We can pretty much ignore this. 558 00:38:22 --> 00:38:25 We can ignore this guy here too. 559 00:38:25 --> 00:38:27 Because it's not, you don't have any steady state 560 00:38:27 --> 00:38:28 or an equilibrium. 561 00:38:28 --> 00:38:31 You have a steady state but not an equilibrium situation. 562 00:38:31 --> 00:38:40 And so in that case here, you can rewrite this then as k1 k2 563 00:38:40 --> 00:38:49 times the substrate times [E]0 divided by k minus one plus k2 564 00:38:49 --> 00:38:53 plus k1 times the substrate. 565 00:38:53 --> 00:39:00 And now we can look at these experimental observations 566 00:39:00 --> 00:39:05 and see whether they match our mechanism. 567 00:39:05 --> 00:39:12 If we can understand something. 568 00:39:12 --> 00:39:15 So let's look at the initial rate. 569 00:39:15 --> 00:39:19 Initial rate is supposed to be proportional to the substrate. 570 00:39:19 --> 00:39:22 Initial rate is supposed to be proportional to the substrate. 571 00:39:22 --> 00:39:34 So the initial rate, k1 k2 plus k1, if at 572 00:39:34 --> 00:39:43 early times, plus one. 573 00:39:43 --> 00:39:56 So the initial rate is going to be, somehow I've got 574 00:39:56 --> 00:40:08 the product missing here. 575 00:40:08 --> 00:40:09 No, I got it backwards here. 576 00:40:09 --> 00:40:11 This is not the initial rate. 577 00:40:11 --> 00:40:15 This is the rate where [S] 578 00:40:15 --> 00:40:19 is small. 579 00:40:19 --> 00:40:23 The initial rate is when you don't have any products made. 580 00:40:23 --> 00:40:25 Or when the product concentration is very low. 581 00:40:25 --> 00:40:28 And because we're making the assumption that the product 582 00:40:28 --> 00:40:31 concentration is basically equal to zero here, 583 00:40:31 --> 00:40:33 this is basically the initial rate here. 584 00:40:33 --> 00:40:36 So by taking the product equal to zero here, we're also 585 00:40:36 --> 00:40:41 saying that this is the same thing as the initial rate. 586 00:40:41 --> 00:40:44 So this is what it looks like here.. 587 00:40:44 --> 00:40:45 The initial rate here. 588 00:40:45 --> 00:40:54 And this is, this, you rewrite as v initial is equal 589 00:40:54 --> 00:40:57 to k2 times [S] 590 00:40:57 --> 00:40:58 times [E]0. 591 00:40:58 --> 00:41:02 You divide by k1 up and down. 592 00:41:02 --> 00:41:07 And you have this k minus one plus k2 over k1 593 00:41:07 --> 00:41:09 and then plus [S] 594 00:41:09 --> 00:41:11 sitting down there. 595 00:41:11 --> 00:41:18 And you define this ratio of rates, k minus one plus k2 over 596 00:41:18 --> 00:41:25 k1 as the KM, the Michaelis constant, by definition. 597 00:41:25 --> 00:41:26 And this is an interesting ratio. 598 00:41:26 --> 00:41:30 This is the rate, k minus one is the rate of destroying the 599 00:41:30 --> 00:41:34 enzyme substrate complex by going back to the reactants. 600 00:41:34 --> 00:41:37 k2 is the destruction of the complex by going 601 00:41:37 --> 00:41:38 to the product. 602 00:41:38 --> 00:41:40 And k1's the creation of the complex. 603 00:41:40 --> 00:41:43 So this is the rate of destruction of the complex 604 00:41:43 --> 00:41:47 divided by the rate of creation of the complex. 605 00:41:47 --> 00:41:50 So if the rate of destruction of the complex is much faster 606 00:41:50 --> 00:41:56 than the rate of creation, meaning that this is a large 607 00:41:56 --> 00:41:59 number, then you're not going to pile up any complex. 608 00:41:59 --> 00:42:02 It's going to be destroyed as soon as you create it. 609 00:42:02 --> 00:42:11 So if KM is large, then the concentration, [ES], is 610 00:42:11 --> 00:42:13 going to be very small. 611 00:42:13 --> 00:42:15 Compared to [E]0. 612 00:42:15 --> 00:42:19 But if the rate of destruction of the complex is small 613 00:42:19 --> 00:42:22 compared to the rate of creation, you create complexes, 614 00:42:22 --> 00:42:25 you create complexes but you don't keep up in terms of 615 00:42:25 --> 00:42:27 destroying them, in terms of making products, or going 616 00:42:27 --> 00:42:29 back to reactants. 617 00:42:29 --> 00:42:33 And so you end up saturating your enzyme. 618 00:42:33 --> 00:42:38 Every enzyme ends up having substrate bound to it. 619 00:42:38 --> 00:42:44 So when KM is very small, then [ES] 620 00:42:44 --> 00:42:51 goes to saturation. 621 00:42:51 --> 00:42:56 Basically, when KM is very small, then you're limited by 622 00:42:56 --> 00:43:00 the rate, the second rate in the process, of the 623 00:43:00 --> 00:43:01 enzyme falling apart. 624 00:43:01 --> 00:43:03 To form the product. 625 00:43:03 --> 00:43:06 You have to wait until that happens. 626 00:43:06 --> 00:43:09 Because then the product just floats away. 627 00:43:09 --> 00:43:14 And that becomes your rate limiting step. 628 00:43:14 --> 00:43:20 Another way that you also will see this written is as this, 629 00:43:20 --> 00:43:28 then, is equal to, we'll define k cat is equal to k2. k cat 630 00:43:28 --> 00:43:35 times the enzyme concentration times the substrate, [E]0, 631 00:43:35 --> 00:43:46 divided by KM plus but the substrate concentration. 632 00:43:46 --> 00:43:48 So let's look at a few limiting cases then. 633 00:43:48 --> 00:43:51 First limiting case is, suppose, that [S] 634 00:43:51 --> 00:43:59 is large. 635 00:43:59 --> 00:44:00 Let's take [S] 636 00:44:00 --> 00:44:03 to be much larger than KM. 637 00:44:03 --> 00:44:07 Because you look at the denominator, and you see it's 638 00:44:07 --> 00:44:10 this ratio of rates but there's this concentration 639 00:44:10 --> 00:44:12 that's important here. 640 00:44:12 --> 00:44:14 So in one case KM is going to dominate, and in the other 641 00:44:14 --> 00:44:17 limiting case the substrate concentration is 642 00:44:17 --> 00:44:17 going to dominate. 643 00:44:17 --> 00:44:20 So let's say that the substrate concentration dominates. 644 00:44:20 --> 00:44:22 Meaning K sub M is small. 645 00:44:22 --> 00:44:23 In which case we already saw. 646 00:44:23 --> 00:44:27 If K sub M is small then you reach saturation. 647 00:44:27 --> 00:44:33 And in the equation, then, the velocity, KM is small, [S] 648 00:44:33 --> 00:44:38 is large, the [S]'s cancel out and the velocity is equal 649 00:44:38 --> 00:44:43 to k cat times the initial substrate concentration. 650 00:44:43 --> 00:44:44 Both of these are constants. 651 00:44:44 --> 00:44:46 The velocity is constant. 652 00:44:46 --> 00:44:50 And the rate is constant, it's that limit up here. 653 00:44:50 --> 00:44:55 That's experimentally seen. 654 00:44:55 --> 00:44:58 And the rate is depending on the initial substrate 655 00:44:58 --> 00:45:01 concentration. 656 00:45:01 --> 00:45:02 Initial enzyme concentration. 657 00:45:02 --> 00:45:04 All the enzymes have a substrate in there. 658 00:45:04 --> 00:45:07 The more enzymes you have to begin with, the more 659 00:45:07 --> 00:45:08 intermediates you're going to have, the faster you 660 00:45:08 --> 00:45:11 going to make products. 661 00:45:11 --> 00:45:13 And then it's going to depend on this on the rate, k cat, 662 00:45:13 --> 00:45:17 which is just k2, which is the rate of formation of products. 663 00:45:17 --> 00:45:24 That becomes the rate limiting step here. 664 00:45:24 --> 00:45:29 The other special case is if substrate concentration is 665 00:45:29 --> 00:45:33 very small compared to KM. 666 00:45:33 --> 00:45:38 And in that case here, and the other thing that we're going to 667 00:45:38 --> 00:45:44 do is, we're going to, because we now understand this as this 668 00:45:44 --> 00:45:49 maximum rate up there, we're going to call this v max. k cat 669 00:45:49 --> 00:45:52 times [E]0, we're going to call it v max. 670 00:45:52 --> 00:45:53 And so when [S] 671 00:45:53 --> 00:46:01 is very small, v, then, is equal to v max, which 672 00:46:01 --> 00:46:03 is k cat times [E]0. 673 00:46:03 --> 00:46:04 This is v max here now. 674 00:46:04 --> 00:46:12 So we can rewrite this as v max times substrate divided by KM 675 00:46:12 --> 00:46:14 plus the substrate concentration. 676 00:46:14 --> 00:46:15 Another way of writing it. 677 00:46:15 --> 00:46:19 Capital K. 678 00:46:19 --> 00:46:23 v max times the substrate concentration. 679 00:46:23 --> 00:46:25 And we have KM plus [S]. 680 00:46:25 --> 00:46:25 But [S] 681 00:46:25 --> 00:46:27 is very small. 682 00:46:27 --> 00:46:28 So we drop it. 683 00:46:28 --> 00:46:33 And this is then proportional to the substrate concentration. 684 00:46:33 --> 00:46:36 And then that's small substrate concentration compared to KM, 685 00:46:36 --> 00:46:37 we're sitting right here. 686 00:46:37 --> 00:46:40 Where it's linear, where the rate is linear. 687 00:46:40 --> 00:46:46 And there's a third place on the graph which is interesting. 688 00:46:46 --> 00:46:52 Which is when the substrate concentration is equal to KM. 689 00:46:52 --> 00:46:54 In that case there, you plug [S] 690 00:46:54 --> 00:46:58 equal to KM, and you end up with the velocity then is equal 691 00:46:58 --> 00:47:04 to v max divided by two. 692 00:47:04 --> 00:47:05 So when [S] 693 00:47:05 --> 00:47:10 is equal to KM, you are halfway up. 694 00:47:10 --> 00:47:18 There's v max over two and there's KM sitting here. 695 00:47:18 --> 00:47:18 When [S] 696 00:47:18 --> 00:47:24 is equal to KM, you're at v max over two. 697 00:47:24 --> 00:47:27 And so enzymes, then, are labeled by their KM's. 698 00:47:27 --> 00:47:31 Because then it becomes very important to know how strongly 699 00:47:31 --> 00:47:34 they bind the substrate. 700 00:47:34 --> 00:47:37 Sometimes you want the enzyme to bind it very strongly. 701 00:47:37 --> 00:47:40 Sometimes you don't, you want it to be fleeting. 702 00:47:40 --> 00:47:45 Depends on the role that the enzyme plays. 703 00:47:45 --> 00:47:52 Now there's a way to plot this that extracts out these 704 00:47:52 --> 00:47:54 important numbers. k cat and KM. 705 00:47:54 --> 00:47:57 706 00:47:57 --> 00:48:00 And that's the Lineweaver-Burk plot.. 707 00:48:00 --> 00:48:06 Lineweaver-Burk plot.. 708 00:48:06 --> 00:48:08 And I just looked up this morning to see if Mr. 709 00:48:08 --> 00:48:09 Lineweaver was still alive. 710 00:48:09 --> 00:48:12 And as far as I can tell he's still alive. 711 00:48:12 --> 00:48:17 He was 97, in 2003. 712 00:48:17 --> 00:48:22 So as of 2007 he was still alive. 713 00:48:22 --> 00:48:25 He's getting up there. 714 00:48:25 --> 00:48:27 One of the most cited papers that you have in your notes is 715 00:48:27 --> 00:48:32 the in Jack's, was the paper that showed how to go from this 716 00:48:32 --> 00:48:39 curved line to a straight line by plotting one over v versus 717 00:48:39 --> 00:48:42 [S], instead of v versus [S]. 718 00:48:42 --> 00:48:51 So if you take your equation and massage it, one over v KM 719 00:48:51 --> 00:48:57 over v max times [S], plus one over v max, we haven't done 720 00:48:57 --> 00:49:00 anything except rewrite the equation in terms of one 721 00:49:00 --> 00:49:05 of v versus one over [S]. 722 00:49:05 --> 00:49:08 So it becomes linear. 723 00:49:08 --> 00:49:14 In one over [S], and there's one over v sitting here. 724 00:49:14 --> 00:49:18 And you get a straight line. 725 00:49:18 --> 00:49:23 With an intercept here that's one over v max. 726 00:49:23 --> 00:49:29 And if you keep going, extrapolate out, you get this 727 00:49:29 --> 00:49:40 point here to be minus 1 over KM and the slope 728 00:49:40 --> 00:49:45 is KM over v max. 729 00:49:45 --> 00:49:48 And v max was equal to k cat times [E]0, so you 730 00:49:48 --> 00:49:53 get k cat out of this. 731 00:49:53 --> 00:49:57 So it turned out to be a very useful plot. 732 00:49:57 --> 00:49:59 It's very easy to plot a straight line, especially 733 00:49:59 --> 00:50:00 before computers. 734 00:50:00 --> 00:50:02 In the age of computers. 735 00:50:02 --> 00:50:06 And the referees, there were six referees that got this 736 00:50:06 --> 00:50:10 paper and pretty much turned it down because they didn't think 737 00:50:10 --> 00:50:11 there was any new chemistry in it. 738 00:50:11 --> 00:50:12 Which is true, there's no new chemistry. 739 00:50:12 --> 00:50:15 It's just a way of rewriting the plot. 740 00:50:15 --> 00:50:18 But it was very important nevertheless. 741 00:50:18 --> 00:50:24 OK, any questions on catalysis? 742 00:50:24 --> 00:50:27 Enzymes? 743 00:50:27 --> 00:50:30 Arrhenius? 744 00:50:30 --> 00:50:34 Alright, next time we'll oscillating reactions 745 00:50:34 --> 00:50:37 and recap the course. 746 00:50:37 --> 00:50:37