6.096 | Spring 2005 | Undergraduate

Algorithms for Computational Biology

Calendar

Lec # Topics key dates
1 Introduction and Biological Databases

2 Rapid Database Search (Hashing)

3 Regulatory Motif Discovery (Combinatorial Search) Assignment 1 out
4 Probabilistic Motif Finding (Gibbs Sampling)

5 Sequence Alignment (Dynamic Programming) Assignment 1 due
6 Markov Chains and Hidden Markov Models

7 Gene Finding

8 Genome Evolution and Phylogenetic Trees Assignment 2 out
9 Genome Duplication

10 Gene Expression Clustering

11-12 Gene Network and Inference Assignment 2 due
13 Scale-free Networks Assignment 3 due
14 Comparative Genomics Assignment 4 due

Course Info

As Taught In
Spring 2005
Learning Resource Types
Lecture Notes
Programming Assignments
Problem Sets