Syllabus

Course Meeting Times

Lectures: 1 session / week, 2 hours / session

Prerequisites

7.03 Genetics

7.05 General Biochemistry

7.06 Cell Biology

7.08 Biological Chemistry II

Course Description

The primary role of mitochondria is to produce 90% of a cell’s energy in the form of ATP through a process called oxidative phosphorylation. Oxidative phosphorylation is carried out in a chain of five protein complexes located in the mitochondrial membrane. The mammalian mitochondrial genome, which is a double-stranded circular molecule about 16,500 nucleotides in length, encodes 37 genes. Of these genes, 13 encode polypeptides that are part of the oxidative phosphorylation machinery, while the remaining genes encode protein synthesis machinery that operates in the mitochondria. Importantly, a byproduct of oxidative phosphorylation is the production of Reactive Oxygen Species (ROS), which are chemically reactive molecules that are capable of damaging many cellular components, including DNA. A low level of ROS production is normal, and cells are equipped with antioxidant defenses that can disarm low levels of ROS.

A variety of clinical disorders have been shown to include “mitochondrial dysfunction,” which loosely refers to defective oxidative phosphorylation and usually coincides with the occurrence of excess ROS production, placing cells under oxidative stress. A known cause and effect of oxidative stress is damage to and mutation of mitochondrial DNA. We will use this class to explore issues relating to mitochondrial DNA integrity and how it can be damaged, repaired, mutated, and compromised in human diseases.

Goals

At the end of this class, students should be able to:

  1. Read, comprehend, and critically evaluate the primary research literature.
  2. Understand the functions of key enzymes involved in mitochondrial DNA repair.
  3. Understand how mitochondrial DNA is damaged and how that leads to mitochondrial DNA mutations.
  4. Understand how improper mitochondrial DNA maintenance affects mitochondrial function, and how that subsequently impacts the cell.
  5. Comprehend molecular and cellular techniques that are commonly used for studies of mitochondria.

Format

This seminar will meet weekly for 2 hours. For each class, students will be required to have read two research papers assigned by the instructor. Prior to each class, students should prepare two questions about each assigned paper. The questions may be about the background, the results, the conclusions, or the methods used. During class there will be a group discussion of the assigned papers.

Grading

This course will be graded Pass/Fail. Grading will be based on reading the assigned papers and preparing the questions, participating in the class discussions, and satisfactorily fulfilling the oral and written assignments.

Calendar

WEEK # TOPICS KEY DATES
1 Introduction of instructor and students and course overview  
2 The vulnerability of mtDNA and consequences of oxidative damage  
3 Repair of 8-oxoG from the mitochondrial genome: The importance of OGG1 and base excision repair pathways  
4 The mitochondrial theory of aging and the importance of OGG1  
5 Mouse models for mtDNA mutation and aging  
6 Oxidative damage and base excision repair in Alzheimer’s disease  
7 mtDNA deletions in neurons and the importance of oxidative phosphorylation  
8 Quality control of mtDNA: The bottleneck and mitochondrial fusion  
9 From yeast to humans: Conservation of Pol γ Written paper due
10 Determination of nuclear encoded genes that contribute to mitochondrial disorders  
11 Field trip to the Laboratory of Vamsi Mootha at Massachusetts General Hospital  
12 mtDNA in cancer and chemotherapeutic resistance  
13 Levels of ROS in the mitochondria of cancer cells  
14 Oral presentations Oral presentations

Course Info

Learning Resource Types

assignment Written Assignments
assignment Presentation Assignments