Functional Magnetic Resonance Imaging: Data Acquisition and Analysis

Labs

LABS	TOPICS	LAB INSTRUCTORS	SUPPORTING FILES
Lab 1	Introduction to fMRI data and analysis (PDF)	Bolar	Solutions (PDF) NeuroLens software NeuroLens tutorial: “Loading DICOM Files and doing an fMRI Analysis” with modifications by Div Bolar (PDF) (Courtesy of Rick Hoge. Used with permission.)  Data for tutorial (ZIP - 23.4 MB) (The ZIP file contains: 218 .dcm, 2 .mnc files, and Stimulus Timing.rtf)
Lab 2	fMRI acquisition (PDF - 1.4 MB)	Whitfield-Gabrieli, Triantafyllou	Lab outline (PDF) fMRI scan checklist (PDF) Detailed explanation of fMRI task paradigms (PDF) Software and data (ZIP - 164 MB)
Lab 3	The life cycle of medical imaging data (PDF)	Pujol	Presentation (PDF - 4.0 MB) Download 3DSlicer code Lab data (ZIP - 92 MB) 3DSlicer tutorial:  Getting Started with Slicer2.6  Pre-computed dataset for tutorial (ZIP – 17.8 MB)
Lab 4	MRI physics Part I (PDF) Part II (PDF)	Trinatafyllou	Lab data (PDF) Notes, part I (PDF) Notes, part II (PDF)
Lab 5	Diffusion weighted imaging workshop (PDF)	Pujol	Presentation (PDF)
Lab 6	Statistical analysis of fMRI data Part I (PDF) Part II (PDF) Part III (PDF) Part IV (PDF)	Yendiki	Data for Parts I-III: subject 7 (ZIP – 56.5 MB) (The ZIP file contains: 368 .dcm files.) Data for Part IV: subjects HST1 and HST2 (ZIP – 97.1 MB) (The ZIP file contains: 736 .dcm files.)