Lab 1 Introduction to fMRI data and analysis (PDF) Bolar

Solutions (PDF)

NeuroLens software

NeuroLens tutorial:

“Loading DICOM Files and doing an fMRI Analysis” with modifications by Div Bolar (PDF) (Courtesy of Rick Hoge. Used with permission.)

Data for tutorial (ZIP - 23.4 MB) (The ZIP file contains: 218 .dcm, 2 .mnc files, and Stimulus Timing.rtf)

Lab 2 fMRI acquisition (PDF - 1.4 MB) Whitfield-Gabrieli, Triantafyllou

Lab outline (PDF)

fMRI scan checklist (PDF)

Detailed explanation of fMRI task paradigms (PDF)

Software and data (ZIP - 164 MB)

Lab 3 The life cycle of medical imaging data (PDF) Pujol

Presentation (PDF - 4.0 MB)

Download 3DSlicer code

Lab data (ZIP - 92 MB)

3DSlicer tutorial:

Getting Started with Slicer2.6

Pre-computed dataset for tutorial (ZIP – 17.8 MB)

Lab 4

MRI physics

Part I (PDF)

Part II (PDF)


Lab data (PDF)

Notes, part I (PDF)

Notes, part II (PDF)

Lab 5 Diffusion weighted imaging workshop (PDF) Pujol Presentation (PDF)
Lab 6

Statistical analysis of fMRI data

Part I (PDF)

Part II (PDF)

Part III (PDF)

Part IV (PDF)


Data for Parts I-III: subject 7 (ZIP – 56.5 MB) (The ZIP file contains: 368 .dcm files.)

Data for Part IV: subjects HST1 and HST2 (ZIP – 97.1 MB) (The ZIP file contains: 736 .dcm files.)

Course Info

As Taught In
Fall 2008
Learning Resource Types
Problem Sets with Solutions
Exams with Solutions
Lecture Notes