Assignments | Foundations of Computational and Systems Biology | Biology | MIT OpenCourseWare

Course Info

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As Taught In

Spring 2014

Level

Graduate

Topics

Engineering
- Biological Engineering
  - Computational Biology
- Systems Engineering
  - Computational Modeling and Simulation
Science
- Biology
  - Computation and Systems Biology

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Assignments

Problem Set 1:Questions-Sequence search, global alignment, BLAST statistics

Problem Set 1:Solutions-Sequence search, global alignment, BLAST statistics

Problem Set 2:Questions- BWT, Library complexity, RNA-seq, Genome assembly, Motifs, Multiple hypothesis testing

Problem Set 2:Solutions- BWT, Library complexity, RNA-seq, Genome assembly, Motifs, Multiple hypothesis testing

pset_2_coding_portion.zip

Problem Set 3:Questions- Gibbs Sampler, RNA secondary structure, Protein Structure with PyRosetta, Connections

Problem Set 3:Solutions- Gibbs Sampler, RNA secondary structure, Protein Structure with PyRosetta, Connections

Problem_set_3.zip

Problem Set 4:Questions- Bayesian Networks, Refining Protein Structures in PyRosetta, Mutual information of protein residues

Problem Set 4:Solution- Bayesian Networks, Refining Protein Structures in PyRosetta, Mutual information of protein residues

Problem_set_4.zip

Problem Set 5:Answers- Network Statistics, Chromatin Structure, Heritability, Association Testing

Problem Set 5:Questions- Network Statistics, Chromatin Structure, Heritability, Association Testing

Course Info

Instructors

Departments

As Taught In

Spring 2014

Level

Graduate

Topics

Learning Resource Types

Lecture Videos

Lecture Notes

Projects

Programming Assignments with Examples

Presentation Assignments

Written Assignments

Instructor Insights

Download Course

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